View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_52 (Length: 289)
Name: NF11718_high_52
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 43663953 - 43663696
Alignment:
| Q |
19 |
gctttatcgagtcaatggagcataaatataatgaatggaagttgaggatgaaacccactaattaattaatcaatttcagataaaataattgtaccaaaaa |
118 |
Q |
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| T |
43663953 |
gctttatcgagtcaatggagcataaatataatgaatggaagttgaggatgaaacccactaattaattaatcaatttcagataaaataattgtaccaaaaa |
43663854 |
T |
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| Q |
119 |
ggtaaacgttgtagcatagtagctcacgaagtgtgtatcatttcattgctaacactgactaaccacactatagtggaccgctgaaatttgacttgccaat |
218 |
Q |
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| T |
43663853 |
ggtaaacgttgtagcatagtagctcacgaagtgtgtatcatttcattgctaacaccgactaaccacactatagtggaccgctgaaatttgacttgccaat |
43663754 |
T |
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| Q |
219 |
taaagcttagcagcacattaatatatgctatgtttgcaacatagtaatgtggtaaatg |
276 |
Q |
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| T |
43663753 |
taaagcttggcagcacattaatatatgctatgtttgcaacatagtaatgtggtaaatg |
43663696 |
T |
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