View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_58 (Length: 252)
Name: NF11718_high_58
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_58 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 34632633 - 34632865
Alignment:
| Q |
17 |
agtagctagtagtacatgtttttctttttattaataaaatgaatgttgaaatgttatgttagaatcaaataatttaagatgatgaatgctgaaacttcaa |
116 |
Q |
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| T |
34632633 |
agtagccagtagtacatgtttttctttttattaataaaatgaatgttgaaatgttatgttagaatcaaat---ttaagatgatgaatgctgaaacttcaa |
34632729 |
T |
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| Q |
117 |
gtcatggccttcgcatgctttgttttaatctttcatgtctatgataatggggaaaaattatgaaaagaaattgaatgttgaatgttgtatgagactgcgt |
216 |
Q |
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| T |
34632730 |
gtcatggccttcgcatgctttgttttaatctttcatgtctacgataatggggaaaaattatgaaaagaaattgaatgttgaatgttgtatgagactgcgt |
34632829 |
T |
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| Q |
217 |
tataggagcatcacctaatatataatgaaattagtt |
252 |
Q |
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| T |
34632830 |
tataggagcatcaccgaatatataatgaaattagtt |
34632865 |
T |
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