View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11718_high_8 (Length: 612)
Name: NF11718_high_8
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 13359579 - 13359141
Alignment:
| Q |
16 |
ataggccagaaaccatttgaccaacaccaatcttgcaacccaccggagaaacaactaagctgcctcaagcaccaccagtagctctgatttaaaacgaaaa |
115 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
13359579 |
ataggccaaaaaccatttgagcaacaccaatcttacaacccatcggagaaacaactaagctgcctcaagcaccaccaatagctctgatttaaaacaaaaa |
13359480 |
T |
|
| Q |
116 |
cacgaccacaacaccaaaccagacaaaacccata----------------------aaaaccatgatggaggagtatgtaatatggagggg-aaatgttg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
13359479 |
cacgaccacaacaccaaaccagacaaaaccgatagaaacctacatgaaacccataaaaaaccatgatggaggagcatgtaatatggagggggaaatgttg |
13359380 |
T |
|
| Q |
193 |
gtactccgacgacgaatgacattttgagaagagagaacatag--tgttttcaaattacgtttttcaatactaaattagataaagttatacttaattttac |
290 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13359379 |
gtacttcgacgacgaatgacattttgagaagagagaacatagagtgttttcaaattacgtttttcaatactaaattagataaagttatacttaattttac |
13359280 |
T |
|
| Q |
291 |
aagtcttaagataatttaaacaaaagtttaaatgaacttttggtcccactctttttaaaaaatttagttttggtcggcctattttaatttgttttgcacc |
390 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13359279 |
aagttttaagataatttaaacaaaagtttaaatgaacttttggtcccacacttttttaaaaatttagttttggtcggcctattttaatttgttttgcacc |
13359180 |
T |
|
| Q |
391 |
tatgtaagatatgttggacttttagtctcccatatatat |
429 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13359179 |
tctgtaagatatgttggacttttagtctcccatatatat |
13359141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 418 - 594
Target Start/End: Complemental strand, 13358968 - 13358794
Alignment:
| Q |
418 |
tcccatatatattttgatgatctgacttattagtttatgatgtgacaacacttgttaacannnnnnnnnnctaacataaatattgagtgtggcctaatat |
517 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||| |||||||| | | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13358968 |
tcccatatatattttgatgttgtgacttattaatttatgacgtgacaacgcatattaacattttttttt-ctaacataaatattgagtgtggcctaataa |
13358870 |
T |
|
| Q |
518 |
atactactacgtcataaatgaatctatcacaacataaaaaatgatccaaaaataagataagttatggaagttcaaaa |
594 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13358869 |
atactactacatcataaatgaatctatca-aacataaaaaatgacccaaaaataagataagttatggaagttcaaaa |
13358794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University