View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11718_low_1 (Length: 1216)

Name: NF11718_low_1
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11718_low_1
NF11718_low_1
[»] chr5 (31 HSPs)
chr5 (1-1216)||(3114024-3115242)
chr5 (685-1216)||(3120567-3121098)
chr5 (368-535)||(3120293-3120458)
chr5 (90-218)||(37873588-37873716)
chr5 (68-218)||(35310477-35310627)
chr5 (11-218)||(27336722-27336930)
chr5 (117-209)||(25663009-25663101)
chr5 (7-218)||(32269663-32269875)
chr5 (68-215)||(15291954-15292101)
chr5 (89-218)||(13166859-13166988)
chr5 (68-209)||(33691983-33692124)
chr5 (68-208)||(43115386-43115525)
chr5 (68-218)||(43129563-43129713)
chr5 (119-209)||(38875676-38875766)
chr5 (68-209)||(14423716-14423857)
chr5 (12-218)||(35455985-35456192)
chr5 (121-201)||(26212564-26212644)
chr5 (144-209)||(34335375-34335440)
chr5 (5-168)||(433371-433535)
chr5 (122-215)||(32230489-32230582)
chr5 (142-218)||(42921726-42921802)
chr5 (161-211)||(430638-430688)
chr5 (226-284)||(37873747-37873805)
chr5 (133-194)||(8858969-8859030)
chr5 (119-209)||(8100590-8100680)
chr5 (139-211)||(14436536-14436605)
chr5 (165-215)||(14723269-14723319)
chr5 (228-292)||(23023527-23023591)
chr5 (225-292)||(32269905-32269972)
chr5 (117-211)||(9829331-9829423)
chr5 (147-212)||(26577407-26577472)
[»] chr4 (33 HSPs)
chr4 (7-218)||(31847116-31847328)
chr4 (68-211)||(53619622-53619765)
chr4 (95-209)||(55933417-55933531)
chr4 (11-212)||(50000795-50000998)
chr4 (82-218)||(56462049-56462184)
chr4 (68-218)||(132414-132566)
chr4 (123-204)||(23255747-23255828)
chr4 (96-209)||(48656866-48656979)
chr4 (98-218)||(30940697-30940816)
chr4 (94-209)||(12918326-12918441)
chr4 (68-218)||(25504324-25504472)
chr4 (80-218)||(26521517-26521655)
chr4 (102-219)||(50462908-50463025)
chr4 (99-218)||(600651-600770)
chr4 (120-218)||(34107674-34107774)
chr4 (51-181)||(53170573-53170703)
chr4 (224-292)||(45661623-45661691)
chr4 (98-209)||(12053451-12053562)
chr4 (82-209)||(16957580-16957707)
chr4 (142-218)||(43849350-43849426)
chr4 (164-211)||(24719970-24720017)
chr4 (155-218)||(50483211-50483274)
chr4 (54-164)||(38535500-38535610)
chr4 (120-218)||(46440869-46440967)
chr4 (133-209)||(28739943-28740020)
chr4 (166-218)||(3330025-3330077)
chr4 (226-282)||(30940841-30940897)
chr4 (163-218)||(7536594-7536649)
chr4 (226-292)||(4419195-4419261)
chr4 (148-194)||(46391323-46391369)
chr4 (133-195)||(52022166-52022228)
chr4 (148-209)||(6865828-6865889)
chr4 (139-212)||(45386060-45386133)
[»] chr6 (25 HSPs)
chr6 (68-218)||(33220639-33220789)
chr6 (97-218)||(17249262-17249383)
chr6 (68-218)||(959609-959759)
chr6 (68-211)||(357645-357788)
chr6 (68-216)||(45605-45753)
chr6 (11-218)||(4206466-4206674)
chr6 (68-218)||(34304525-34304675)
chr6 (68-212)||(28008915-28009062)
chr6 (11-292)||(32115650-32115926)
chr6 (68-218)||(34415465-34415615)
chr6 (7-194)||(12401384-12401572)
chr6 (94-202)||(34168913-34169021)
chr6 (112-218)||(24016366-24016472)
chr6 (80-206)||(34554217-34554343)
chr6 (138-218)||(4165920-4166000)
chr6 (68-209)||(28543413-28543554)
chr6 (83-208)||(29338022-29338147)
chr6 (7-150)||(20693467-20693610)
chr6 (122-211)||(3714953-3715042)
chr6 (227-285)||(29338189-29338247)
chr6 (116-209)||(28625968-28626062)
chr6 (224-292)||(28625863-28625930)
chr6 (128-211)||(6225108-6225191)
chr6 (226-285)||(28009096-28009155)
chr6 (143-212)||(7200540-7200607)
[»] chr1 (27 HSPs)
chr1 (68-218)||(34644595-34644745)
chr1 (51-218)||(19035476-19035643)
chr1 (12-201)||(50161288-50161478)
chr1 (7-218)||(28040993-28041205)
chr1 (11-218)||(29169664-29169871)
chr1 (58-218)||(25375751-25375911)
chr1 (67-217)||(42919890-42920039)
chr1 (5-218)||(45659511-45659726)
chr1 (98-209)||(31737281-31737392)
chr1 (68-209)||(2764517-2764658)
chr1 (12-219)||(37200011-37200217)
chr1 (143-208)||(21473042-21473107)
chr1 (117-216)||(20259774-20259873)
chr1 (9-218)||(4861857-4862067)
chr1 (120-218)||(22346924-22347022)
chr1 (94-211)||(16500070-16500187)
chr1 (119-218)||(2898731-2898833)
chr1 (122-215)||(36486918-36487011)
chr1 (226-287)||(38731546-38731607)
chr1 (119-195)||(23043929-23044005)
chr1 (68-187)||(37932146-37932264)
chr1 (169-218)||(24177540-24177589)
chr1 (129-210)||(50314613-50314694)
chr1 (123-190)||(35387643-35387710)
chr1 (157-218)||(7213279-7213341)
chr1 (148-182)||(19035424-19035458)
chr1 (176-218)||(47459711-47459753)
[»] chr8 (24 HSPs)
chr8 (70-209)||(38815332-38815471)
chr8 (68-211)||(39434703-39434846)
chr8 (68-218)||(500256-500406)
chr8 (5-218)||(35739851-35740064)
chr8 (7-218)||(25021680-25021892)
chr8 (68-218)||(3187998-3188148)
chr8 (51-218)||(24125057-24125224)
chr8 (98-218)||(6592604-6592724)
chr8 (9-212)||(8619849-8620047)
chr8 (83-218)||(10189572-10189707)
chr8 (97-211)||(4073571-4073685)
chr8 (133-203)||(8882371-8882441)
chr8 (115-211)||(28196228-28196324)
chr8 (98-178)||(37517163-37517243)
chr8 (222-285)||(25021919-25021982)
chr8 (116-287)||(42922103-42922273)
chr8 (122-218)||(6618313-6618409)
chr8 (95-171)||(11611199-11611275)
chr8 (130-208)||(10556283-10556361)
chr8 (226-292)||(38815226-38815292)
chr8 (113-197)||(4699919-4700002)
chr8 (180-219)||(43824017-43824056)
chr8 (139-201)||(39671170-39671232)
chr8 (96-153)||(8390234-8390291)
[»] chr7 (33 HSPs)
chr7 (68-211)||(28517215-28517358)
chr7 (11-209)||(4501296-4501495)
chr7 (68-218)||(21326766-21326916)
chr7 (11-217)||(45613712-45613919)
chr7 (80-218)||(32584630-32584768)
chr7 (7-218)||(43856903-43857115)
chr7 (51-215)||(982981-983145)
chr7 (11-209)||(5825311-5825508)
chr7 (106-218)||(19277322-19277434)
chr7 (67-218)||(27521500-27521651)
chr7 (68-218)||(2904394-2904544)
chr7 (51-211)||(3676675-3676836)
chr7 (122-218)||(30216040-30216136)
chr7 (83-218)||(22198015-22198150)
chr7 (83-218)||(22239671-22239806)
chr7 (80-218)||(24527618-24527756)
chr7 (133-218)||(42295177-42295262)
chr7 (118-214)||(10905151-10905246)
chr7 (138-209)||(40726478-40726549)
chr7 (74-210)||(9281066-9281201)
chr7 (74-210)||(9292037-9292172)
chr7 (80-168)||(33202405-33202493)
chr7 (98-218)||(34067820-34067939)
chr7 (226-287)||(43856811-43856872)
chr7 (80-203)||(25186876-25186999)
chr7 (80-209)||(34772819-34772946)
chr7 (98-166)||(1249667-1249735)
chr7 (10-211)||(38839360-38839564)
chr7 (224-287)||(30216165-30216228)
chr7 (226-292)||(27521403-27521469)
chr7 (133-205)||(43383211-43383283)
chr7 (167-215)||(48539213-48539261)
chr7 (226-292)||(45613951-45614017)
[»] chr3 (28 HSPs)
chr3 (51-216)||(44198798-44198963)
chr3 (75-211)||(46940705-46940841)
chr3 (12-218)||(7900887-7901094)
chr3 (80-218)||(39583169-39583307)
chr3 (5-218)||(53785738-53785952)
chr3 (5-218)||(49017992-49018206)
chr3 (112-216)||(37132971-37133075)
chr3 (68-218)||(52741439-52741590)
chr3 (94-218)||(26772787-26772911)
chr3 (84-218)||(4473090-4473224)
chr3 (51-218)||(13582539-13582705)
chr3 (68-195)||(37992384-37992511)
chr3 (97-218)||(5338672-5338796)
chr3 (147-212)||(38670887-38670952)
chr3 (80-211)||(38146092-38146223)
chr3 (141-218)||(32546824-32546901)
chr3 (98-218)||(3443270-3443390)
chr3 (98-218)||(38978757-38978877)
chr3 (139-218)||(7502010-7502090)
chr3 (124-211)||(54508367-54508455)
chr3 (147-209)||(51234654-51234716)
chr3 (124-195)||(43123197-43123268)
chr3 (226-292)||(13582442-13582508)
chr3 (226-292)||(38145988-38146054)
chr3 (152-209)||(52411903-52411960)
chr3 (216-260)||(7502109-7502153)
chr3 (225-293)||(46320025-46320093)
chr3 (226-288)||(46940882-46940944)
[»] scaffold0490 (1 HSPs)
scaffold0490 (51-218)||(6363-6529)
[»] scaffold0148 (1 HSPs)
scaffold0148 (68-218)||(33279-33428)
[»] chr2 (25 HSPs)
chr2 (5-208)||(23484802-23485006)
chr2 (11-218)||(41867778-41867986)
chr2 (7-218)||(2888545-2888753)
chr2 (68-209)||(5532457-5532598)
chr2 (98-218)||(4413024-4413144)
chr2 (51-211)||(9685326-9685486)
chr2 (5-215)||(19161647-19161858)
chr2 (80-218)||(28225029-28225167)
chr2 (68-177)||(44686490-44686598)
chr2 (5-218)||(17344667-17344881)
chr2 (121-201)||(1296031-1296111)
chr2 (139-215)||(13147096-13147175)
chr2 (68-209)||(27502400-27502540)
chr2 (133-214)||(34814812-34814893)
chr2 (142-205)||(18744956-18745019)
chr2 (80-209)||(3825764-3825894)
chr2 (148-218)||(33612555-33612625)
chr2 (163-217)||(2886638-2886692)
chr2 (133-211)||(5679314-5679392)
chr2 (226-292)||(17344570-17344636)
chr2 (226-292)||(41868017-41868083)
chr2 (168-215)||(20142753-20142800)
chr2 (226-284)||(13413291-13413349)
chr2 (68-145)||(9674946-9675023)
chr2 (143-196)||(44720374-44720427)
[»] scaffold0224 (1 HSPs)
scaffold0224 (67-217)||(18292-18441)
[»] scaffold0186 (1 HSPs)
scaffold0186 (68-218)||(10389-10543)
[»] scaffold1768 (1 HSPs)
scaffold1768 (11-215)||(54-259)
[»] scaffold0110 (1 HSPs)
scaffold0110 (68-218)||(47467-47617)
[»] scaffold0031 (1 HSPs)
scaffold0031 (116-209)||(49449-49542)
[»] scaffold0009 (1 HSPs)
scaffold0009 (80-218)||(103135-103272)
[»] scaffold0493 (1 HSPs)
scaffold0493 (149-218)||(8525-8594)
[»] scaffold0119 (1 HSPs)
scaffold0119 (106-190)||(16191-16275)
[»] scaffold0470 (1 HSPs)
scaffold0470 (122-218)||(7631-7727)
[»] scaffold0085 (1 HSPs)
scaffold0085 (133-186)||(37391-37444)


Alignment Details
Target: chr5 (Bit Score: 1070; Significance: 0; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 1070; E-Value: 0
Query Start/End: Original strand, 1 - 1216
Target Start/End: Original strand, 3114024 - 3115242
Alignment:
Q  1 tagtcatgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3114024 tagtcatgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggtcggggctt 3114123  T
Q  101 ttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttt 200  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114124 ttacggtaggacaggcagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttt 3114223  T
Q  201 tgacacttttggtttccttctacaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatttgtctt-- 298  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  3114224 tgacacttttggtttccttctacagagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatttgtcttct 3114323  T
Q  299 --tcatgtgtgattattcttgnnnnnnnnnnnnnnntccaaagcattttttgtaattcggtactatgcagttagacatacaaaaatagtttttctctaac 396  Q
      |||||||| ||||||||||               |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3114324 attcatgtgtaattattcttgatatataatatatattccaaagcattttttgtaattcagtactatgcagttagacatacaaaaatagtttttctctaac 3114423  T
Q  397 tgacctgttgtttgagcaagctatgtccttttcctccggatcttgggcaaagaagcaccctaactgaagagtgcttgaaaaagctgcgagtttcctcatc 496  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114424 tgacctgttgtttcagcaagctatgtccttttcctccagatcttgggcaaagaagcaccctaactgaagagtgcttgaaaaagctgcgagtttcctcatc 3114523  T
Q  497 ataagtgttcataagtccaacctacatatcaagaaatcaataaatcattgaaatttggtaaaagaagtaagaaactggttacaacttaattgcctattca 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3114524 ataagtgttcataagtccaacctacatatcaagaaatcaataaatcatagaaatttggtaaa-gaagtaagaaactggttacaacttaattgcctattca 3114622  T
Q  597 aatgtagcagcaaggcatgccaagggaatacactaatagagttagagagccaagtatcagaaacataaatagaaagnnnnnnnngaagatcattactgtt 696  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  3114623 aaaatagcagcaaggcatgccaagggaatacactaatagagttagagagccaagtatcagaaacataaatagaaagttttttttgaagatcattactgtt 3114722  T
Q  697 ttatatccaagcatgctgttagaagtaggatcatcccacactagtagaagcactctcacaccttcttgtgatttagctttgagaagatcacctaatgtac 796  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114723 ttatatccaagcatgctgttagaagtaggatcatcccacacaagtagaagcactctcacaccttcttgtgatttagctttgagaagatcacctaatgtac 3114822  T
Q  797 aatcttttccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcctgacttattgcatcaaa 896  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114823 aatcttttccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcctgacttattgcatcaaa 3114922  T
Q  897 gatatcatgccaacaatttccactgtcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtggaacatgagcatcttga 996  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114923 gatatcatgccaacaatttccactctcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtggaacatgagcatcttga 3115022  T
Q  997 taaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaacaccattgctataaagggctaccttatcaa 1096  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3115023 taaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaacaccattgctataaagggctaccttatcaa 3115122  T
Q  1097 caggtgtatactgaattgacaagctcaaaattgtttcagtcttaaagggttttccattagtattgagaatgggaaaaaagccttcaacttttgtaccatc 1196  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3115123 caggtgtatactgaattgacaagctcaaaattgcttcagtcttaaagggttttccattagtattgagaatgggaaaaaagccttcaacttttgtaccatc 3115222  T
Q  1197 acataatttttctactggaa 1216  Q
    ||||||||||||||||||||    
T  3115223 acataatttttctactggaa 3115242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 685 - 1216
Target Start/End: Original strand, 3120567 - 3121098
Alignment:
Q  685 atcattactgttttatatccaagcatgctgttagaagtaggatcatcccacactagtagaagcactctcacaccttcttgtgatttagctttgagaagat 784  Q
    |||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3120567 atcattaccgttttatatccaaacatgcttttagaagtaggatcatcccacacaagtagaagcactctcacaccttcttgtgatttagctttgagaagat 3120666  T
Q  785 cacctaatgtacaatcttttccatctctagtatccctaatgagactaacattgtagtaaacagaccaaccaacaatatataccaatcgtcgcgcctgact 884  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||    
T  3120667 cacctaatgtacaatcttttccatctctagtatccctaatgagactaacattgtagtacacggaccaaccaacaatatagaccaatcgacgagcctgact 3120766  T
Q  885 tattgcatcaaagatatcatgccaacaatttccactgtcataactcaaatcatgatcaccaccatcaaccctcaaactaggaagacaaccttgtggaaca 984  Q
    |||||||||||||||||| ||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3120767 tattgcatcaaagatatcttgccaacaatttccactctcataaataacatcatgatcaccaccatcaaccctcaaaccaggaagacaaccttgtggaaca 3120866  T
Q  985 tgagcatcttgataaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaatcaccaccaacaccattgctataaaggg 1084  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||  ||||||||||||||||||||| |    
T  3120867 tgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataatcagaaccaacaccattgctataaagcg 3120966  T
Q  1085 ctaccttatcaacaggtgtatactgaattgacaagctcaaaattgtttcagtcttaaagggttttccattagtattgagaatgggaaaaaagccttcaac 1184  Q
     || |||||||| ||| |||||||||||||| ||||||||||  ||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  3120967 ttatcttatcaataggagtatactgaattgataagctcaaaacggtttcggtcttgaagggttttccattagtattaagaatggggaaaaagccttcaac 3121066  T
Q  1185 ttttgtaccatcacataatttttctactggaa 1216  Q
    ||||| |||||||||||| ||||| |||||||    
T  3121067 ttttgcaccatcacataacttttcaactggaa 3121098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 9e-64
Query Start/End: Original strand, 368 - 535
Target Start/End: Original strand, 3120293 - 3120458
Alignment:
Q  368 tagacatacaaaaatagtttttctctaactgacctgttgtttgagcaagctatgtccttttcctccggatcttgggcaaagaagcaccctaactgaagag 467  Q
    |||||||||||||||||||||||   |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  3120293 tagacatacaaaaatagtttttca--aactgacctgctgtttgagccagctatgtccttttcctccagatcttgggcaaagaagcaccttaactgaagag 3120390  T
Q  468 tgcttgaaaaagctgcgagtttcctcatcataagtgttcataagtccaacctacatatcaagaaatca 535  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3120391 tgcttgaaaaaactgcgagtttcctcgtcataagtgttcataagtccaacctacatatcaacaaatca 3120458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 37873588 - 37873716
Alignment:
Q  90 ggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttata 189  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  37873588 ggttggggcttttacggtaggacagacagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttata 37873687  T
Q  190 ccatttgtttttgacacttttggtttcct 218  Q
    ||||||| ||||||||||||||| |||||    
T  37873688 ccatttgcttttgacacttttggcttcct 37873716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 35310627 - 35310477
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  35310627 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacaaccctaaaagatgcgtcaagcaaagtggccaaacatgagaaagcatgttc 35310528  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| |||||||| ||||||||||| || |||||||||||| || |||||    
T  35310527 tgacaatcaacatgcttttataccatctgcttttgacactttcggcttcct 35310477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 27336930 - 27336722
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    |||||||||||||||  ||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| |||||||| |||||||||||  |||    
T  27336930 gatgttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacaatag 27336831  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    | |||||||||||||||||||| |||| |||||||| ||||||||||||| | |||||||||| |||||||  |||||||||||||| |||||||||||     
T  27336830 gacagacagccctaaaagttgcgtcaagcaaagtggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatttgcttttgacacttg 27336731  T
Q  210 tggtttcct 218  Q
    ||| |||||    
T  27336730 tggcttcct 27336722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 25663009 - 25663101
Alignment:
Q  117 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||    
T  25663009 agccctaaaagctgcatcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacacttt 25663101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 32269663 - 32269875
Alignment:
Q  7 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 105  Q
    |||||||||||||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  ||| |||||| || ||| |||||| |    
T  32269663 tgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttctggaattaggtgtcgggccttttatg 32269762  T
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    ||||| ||  || ||||||||| |||||||| |||||||| ||||||||||||||  |||||||||| |||||| | |||||||||||||| |||||| |    
T  32269763 gtaggacatgcaaccctaaaagctgcatcaaccaaagtggtcaaacatgagaaagtgtgttctgacaatcaacacgcttttataccatttgcttttgata 32269862  T
Q  206 cttttggtttcct 218  Q
    |||| | ||||||    
T  32269863 ctttcgatttcct 32269875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 15291954 - 15292101
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  | |||||| | || ||| ||||| ||||| | |||||| |||||||||| || ||||||||||||||||||||||||||| | |||||    
T  15291954 tttcaccacttgttggattaagtgtcgggccttttgcggtatgacagacaaccctaaaagtggcgtcaaacaaagtggccaaacatgagaaaacgtgttc 15292053  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggttt 215  Q
    ||||| ||||||||||||||||| |||||||||| |||||||| ||||    
T  15292054 tgacaatcaacatgtttttatacaatttgttttttacacttttagttt 15292101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 13166859 - 13166988
Alignment:
Q  89 gggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttat 188  Q
    ||||| ||||||||||||| || |||||| ||||||||  ||| |||| ||||||||| |||||||||||||| |||||||||| |||||||| ||||||    
T  13166859 gggttagggcttttacggtgggacagacaaccctaaaatctgcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttat 13166958  T
Q  189 accatttgtttttgacacttttggtttcct 218  Q
    |||||||| |||||||||||| || |||||    
T  13166959 accatttgcttttgacactttcggcttcct 13166988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 33691983 - 33692124
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| ||| ||| |||||||| ||| |||| |||||||||||||||||| ||| | ||||     
T  33691983 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacaggcaggcctaaaagctgcgtcaagcaaagtggccaaacatgacaaaacgtgtta 33692082  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||||| |||||||| |||| ||||||||| ||||||||||||    
T  33692083 tgacaatcaacatgcttttgtaccatttgcttttgacacttt 33692124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 43115386 - 43115525
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||||||||||||| ||| |||||||||||||||||  ||||||||||||||||||| | ||| |||| || |||| |||||||||| ||||     
T  43115386 tttcaccactcatgggattagaggtcggggcttttacggtaggatagacagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagcgtgttt 43115484  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacactt 208  Q
    ||||| |||||||| ||| ||| |||||| |||||||||||    
T  43115485 tgacaatcaacatgctttcatagcatttgcttttgacactt 43115525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 43129713 - 43129563
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  | ||||||||||| ||  |||||||||| || ||  ||| |||||||| ||| |||| |||||||| ||||||||||||| | |||||    
T  43129713 tttcaccacttgttggattaggggtcggaacttttacggttggacattcagtcctaaaagatgcgtcaagcaaagtggtcaaacatgagaaaacgtgttc 43129614  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| ||||||||||||| ||||||||| |||||||| ||| ||||||||    
T  43129613 tgacaatcaacatgtttttctaccatttgcttttgacattttcggtttcct 43129563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 38875766 - 38875676
Alignment:
Q  119 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||||||||  |||||||||||||| | |||||||||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  38875766 ccctaaaaactgcatcaaacaaagcgaccaaacatgagaaagtgtgttctgacaatcaacatgtttttgtaccatttgtttttgacacttt 38875676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 14423857 - 14423716
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||||||||| || ||  |||| || ||||| ||| || ||||||||  ||| |||| ||||||| || ||||||||||||| |||||    
T  14423857 tttcaccacttgtgggattaggtgtcggacctttaaccgtaggacaggcaaccctaaaaaatgcgtcaagcaaagtgaccgaacatgagaaagcgtgttc 14423758  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||||| |||||||| |||||||||||||| ||||||||||||    
T  14423757 tgacaatcaacatgcttttataccatttgcttttgacacttt 14423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 35456192 - 35455985
Alignment:
Q  12 atgttatggtgtacaaatgggtaagagg-aaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 110  Q
    ||||||||||||||| ||||||| |||| ||| |  ||| ||| ||||||||| |  |||  |||||| | |||||||||||  || |||||||||||||    
T  35456192 atgttatggtgtacagatgggtaggaggtaaatatgcatgtgtggacttgaccggggttttgccactcgtaggattaggggtccggccttttacggtagg 35456093  T
Q  111 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 210  Q
    | ||  ||||| ||||||||  | ||  ||| ||| ||||||||||||||| |||||| ||| |||||||| ||||||||| |||| |||||||| ||||    
T  35456092 gtaggtagcccaaaaagttgtgttaagtaaaatggtcaaacatgagaaagcgtgttctaacaatcaacatgcttttataccttttgcttttgacaatttt 35455993  T
Q  211 ggtttcct 218  Q
    || |||||    
T  35455992 ggcttcct 35455985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 26212564 - 26212644
Alignment:
Q  121 ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 201  Q
    ||||||||||| |||| |||||||||||||||||||||||| | |||||||  |||||||| |||||||||||||||||||    
T  26212564 ctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtattctgacgatcaacatgcttttataccatttgttttt 26212644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 34335440 - 34335375
Alignment:
Q  144 ggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    |||||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||    
T  34335440 ggccaaacatgagaaagcgtgtcctgacaatcaacatgcttttataccatttgtttttgacacttt 34335375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 433535 - 433371
Alignment:
Q  5 catgcagatgttatggtgtacaaatgggtaagaggaaacact-catttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 103  Q
    ||||| |||||||||||||||| ||||||  |||||||   | ||| ||| ||||||||| |  |||||||||   |||| ||| |||| ||||||||||    
T  433535 catgcggatgttatggtgtacagatgggttggaggaaaatatgcatgtgtggacttgaccggggtttcaccacctgtgggtttaagggtaggggctttta 433436  T
Q  104 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttct 168  Q
    |||||||  ||||| || |||||| ||  |||| |||||||||||||||||||||||| ||||||    
T  433435 cggtaggatagacaaccttaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttct 433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 32230489 - 32230582
Alignment:
Q  122 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 215  Q
    |||||||||| |||| ||||||| ||||||||||||||   |||||||||| |||||| | ||||||||||| ||  || ||||||||||||||    
T  32230489 taaaagttgcgtcaagcaaagtgaccaaacatgagaaaatgtgttctgacaatcaacaagcttttataccatctgcgttcgacacttttggttt 32230582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 42921802 - 42921726
Alignment:
Q  142 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||| |||||| |||||| | |||||||||| |||||||| |||||||||||||| || ||||||||| ||||||||    
T  42921802 gtggtcaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcct 42921726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 430688 - 430638
Alignment:
Q  161 catgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  430688 catgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 37873747 - 37873805
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgttta 284  Q
    |||||||||||||||||| ||||||||||| ||| | |||||| |||||||||||||||    
T  37873747 agttcaaagggtcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgttta 37873805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 8859030 - 8858969
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 194  Q
    |||| |||||| | ||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  8859030 tcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacatgtttttatatcatt 8858969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 8100680 - 8100590
Alignment:
Q  119 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||||||| | ||||||||  ||| ||| ||||||||||||| | |||| ||||| |  ||||| ||||||||||||||||| |||||||||    
T  8100680 ccctaaacgctgcatcaagtaaaatggtcaaacatgagaaaacgtgttgtgacaatttacatgcttttataccatttgtttgtgacacttt 8100590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 14436605 - 14436536
Alignment:
Q  139 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    ||||||||||||||||| ||| | |||||| |   |||||||||||||||| |||||||||||||||| ||||    
T  14436605 aaagtggccaaacatgaaaaaacgtgttctaa---tcaacatgtttttatatcatttgtttttgacacctttg 14436536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 14723269 - 14723319
Alignment:
Q  165 ttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 215  Q
    |||||||| |||||||| ||||||| ||||||||||| |||||||||||||    
T  14723269 ttctgacaatcaacatgcttttatatcatttgttttttacacttttggttt 14723319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 23023591 - 23023527
Alignment:
Q  228 ttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||| ||||||||| | |||||||||  |||| |||||  |||||||||||||||||||||||    
T  23023591 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagatt 23023527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 32269905 - 32269972
Alignment:
Q  225 aagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    ||||||||| ||||||||| | |||||||||  |||| |||||  |||||||||||||||||| ||||    
T  32269905 aagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 32269972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 9829331 - 9829423
Alignment:
Q  117 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    ||||||||||||||| | || ||||||||| || ||||| |||   |||| ||||| |||||||| ||||||||||||| | |||||||||||||    
T  9829331 agccctaaaagttgcgt-aagcaaagtggctaa-catgataaaatgtgttttgacaatcaacatgcttttataccatttatatttgacacttttg 9829423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 26577407 - 26577472
Alignment:
Q  147 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 212  Q
    ||||||| ||||||  ||||| |||  ||||||||||||||||| |||||| ||| ||||||||||    
T  26577407 caaacataagaaagtgtgttccgactatcaacatgtttttatacaatttgtgtttcacacttttgg 26577472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 5e-47; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 31847328 - 31847116
Alignment:
Q  7 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 105  Q
    ||||||| |||||||||||| |||| |  ||||||| ||  ||| ||| |||||||| ||  ||||||||||  |||| |||||||| |||||||||||     
T  31847328 tgcagatattatggtgtacagatggattggaggaaaacatgcatgtgtggacttgactagggtttcaccacttgtgggtttaggggtgggggcttttaca 31847229  T
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    ||||| ||| |||||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||    
T  31847228 gtaggacaggcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaccatgttctgacagtcaacatgtttttttaccatttgcttttgaca 31847129  T
Q  206 cttttggtttcct 218  Q
    ||||||| |||||    
T  31847128 cttttggcttcct 31847116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 53619765 - 53619622
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||| ||| ||||||||||| ||||| ||| || ||||||||| ||| |||| |||||||||||||||||||||| | |||||    
T  53619765 tttcaccacttgtgggtttagaggtgggggcttttacagtaggacaggcaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaaacgtgttc 53619666  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  53619665 tgacaatcaacatgcttttataccatttgtttttgacacttttg 53619622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 55933417 - 55933531
Alignment:
Q  95 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 194  Q
    |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||| ||| |||||||| ||||||||||||    
T  55933417 gggcttttacggtaggacagtcagccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtttgttctaacaatcaacatgcttttataccatt 55933516  T
Q  195 tgtttttgacacttt 209  Q
    || ||||||||||||    
T  55933517 tgcttttgacacttt 55933531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 50000795 - 50000998
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    |||||||||||||||  ||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| | |||||| ||||||||||||||||    
T  50000795 gatgttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggttaaggggtgggggcttttacggtag 50000894  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg-tttttataccatttgtttttgacactt 208  Q
    | |||||||| ||||||| ||| |||| |||||||| ||||||||||||||| |||||||||| |||||||| |||| |||| ||||| |||||||||||    
T  50000895 gacagacagctctaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttaatacaatttgcttttgacactt 50000994  T
Q  209 ttgg 212  Q
    ||||    
T  50000995 ttgg 50000998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 56462049 - 56462184
Alignment:
Q  82 ggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg 181  Q
    ||||||||||| | | |||||||||| |   ||||  ||||||||||||| |||||||||||||| |||||||| ||||| |||||||||| ||||||||    
T  56462049 ggattaggggtcgagacttttacggttgtatagaccaccctaaaagttgcgtcaaacaaagtggc-aaacatgataaagcgtgttctgacaatcaacatg 56462147  T
Q  182 tttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||||||||||| |||||||||||||||||    
T  56462148 tttttataccatttgttttagacacttttggtttcct 56462184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 132566 - 132414
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggt--agggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgt 165  Q
    ||||||||||  | ||||||||||| ||| ||||||||||  ||| ||| |||||||||||| ||| |||| |||| |||| |||||||||||| | |||    
T  132566 tttcaccacttgttggattaggggtcgggacttttacggtgtaggacaggcagccctaaaagctgcgtcaagcaaaatggcaaaacatgagaaatcgtgt 132467  T
Q  166 tctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||    
T  132466 tctgacaatcaacatgcttttataccatttgttttttacactttcggtttcct 132414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 23255828 - 23255747
Alignment:
Q  123 aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgac 204  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||    
T  23255828 aaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaattaacatgcttttataccatttgtttttgac 23255747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 48656866 - 48656979
Alignment:
Q  96 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 195  Q
    ||||||||| ||| | |||||||||||||||||| ||||||  ||| ||| ||||||||||||||  |||| || || |||| |||||||||||||||||    
T  48656866 ggcttttacagtatgacagacagccctaaaagtttcatcaagtaaaatggacaaacatgagaaagtgtgttatgtcaatcaaaatgtttttataccattt 48656965  T
Q  196 gtttttgacacttt 209  Q
    ||||||||||||||    
T  48656966 gtttttgacacttt 48656979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 30940697 - 30940816
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    |||||||  |||| |||||| ||||||||||||| ||||  ||||||| ||||||||||||||| |||||||||| |||||||| |||||||||| |||     
T  30940697 cttttaccataggacagacaaccctaaaagttgcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacca-ttgc 30940795  T
Q  198 ttttgacacttttggtttcct 218  Q
    |||||||||||| | ||||||    
T  30940796 ttttgacactttcgatttcct 30940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 12918326 - 12918441
Alignment:
Q  94 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 193  Q
    ||||||||||||||||| || ||| ||||||||||||| ||||||||||||| ||||||| ||||| | |||||||||| ||||||   |||||||| ||    
T  12918326 ggggcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggtcaaacataagaaatcgtgttctgacaatcaacacacttttatactat 12918425  T
Q  194 ttgtttttgacacttt 209  Q
    ||  ||||||||||||    
T  12918426 ttacttttgacacttt 12918441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 25504472 - 25504324
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||||||||| ||  || ||||||||||| | ||| || ||||||| |||||||||| |||| ||| ||||||||||||| | |||||    
T  25504472 tttcaccacttgtgggattaggcgtcaggccttttacggtatgacaggcaaccctaaa-gttgcatcaagcaaa-tggtcaaacatgagaaaacgtgttc 25504375  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    | ||| || ||||||||||||||| |||| |||||||| ||||||||||||    
T  25504374 taacaatcgacatgtttttataccgtttgcttttgacatttttggtttcct 25504324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 26521655 - 26521517
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    |||||||||||||  |  |||||| |||||| || ||| ||||||||||||| |||||||||||||| |||||||| ||| | |||| ||||| ||||||    
T  26521655 tgggattaggggtcagaccttttatggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggctaaacatgaaaaaacgtgttatgacaatcaaca 26521556  T
Q  180 tgtttttataccatttgtttttgacacttttggtttcct 218  Q
    || ||||||| ||| || |||  ||||||||||||||||    
T  26521555 tgcttttatatcatatgctttcaacacttttggtttcct 26521517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 50462908 - 50463025
Alignment:
Q  102 tacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 201  Q
    ||||||||| ||||||||| |||||||||| |||| |||  || |||||||||||||||  | ||| |||| |||||||| ||| |||||||||| ||||    
T  50462908 tacggtaggacagacagccttaaaagttgcgtcaagcaagatgaccaaacatgagaaagtgtcttccgacaatcaacatgctttcataccatttgctttt 50463007  T
Q  202 gacacttttggtttcctt 219  Q
    |||||||||| |||||||    
T  50463008 gacacttttgatttcctt 50463025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 600651 - 600770
Alignment:
Q  99 ttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtt 198  Q
    |||||| ||||| |||||| |||||||||||   |||| ||||||| |||||||||||||| | |||||| ||| | |||||| |||||||||||||| |    
T  600651 ttttactgtaggacagacaaccctaaaagttatgtcaagcaaagtgaccaaacatgagaaaacgtgttctaacaattaacatgcttttataccatttgct 600750  T
Q  199 tttgacacttttggtttcct 218  Q
    |||| |||||| ||||||||    
T  600751 tttgtcactttcggtttcct 600770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 34107674 - 34107774
Alignment:
Q  120 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgt--tctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 217  Q
    ||||||| |||| |||||| |||||||||||||||||||| | |||  || || | |||||||||||||||||||||||||||||||||||| | |||||    
T  34107674 cctaaaaattgcgtcaaacgaagtggccaaacatgagaaaacgtgtgttcagataatcaacatgtttttataccatttgtttttgacactttcgatttcc 34107773  T
Q  218 t 218  Q
    |    
T  34107774 t 34107774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 53170703 - 53170573
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    ||||||||||||  |  ||||||||||| |||||||||| || ||  ||||||| ||| | ||| ||||||||||||| |  | |   ||||| ||||||    
T  53170703 tgtagacttgactggggtttcaccactcgtgggattaggtgtcggaccttttacagtatgacaggcagccctaaaagtcgtgttaggtaaagtagccaaa 53170604  T
Q  151 catgagaaagcatgttctgacagtcaacatg 181  Q
    ||||||||||| |||||||||||||||||||    
T  53170603 catgagaaagcgtgttctgacagtcaacatg 53170573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 45661691 - 45661623
Alignment:
Q  224 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    ||||||||||||||||| |||||||||||||||||||  |||||  ||||| |||||||||||| ||||    
T  45661691 aaagttcaaagggtcatacacaacaatgtcataactcgtaggtccatgaatattgtgtttacgaggatt 45661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 12053562 - 12053451
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    ||||||| ||||| || ||||| ||||||| ||| ||||||||||| | ||||||||||||| | |||||| ||| |||| | ||||||||| ||||||     
T  12053562 cttttacagtaggacaaacagctctaaaagctgcgtcaaacaaagttgtcaaacatgagaaatcgtgttctaacaatcaaaacgtttttatatcatttgc 12053463  T
Q  198 ttttgacacttt 209  Q
    ||| ||| ||||    
T  12053462 tttcgactcttt 12053451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 16957707 - 16957580
Alignment:
Q  82 ggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg 181  Q
    ||||||||||| ||| || |||| |||||  || ||| |||||||||||| |  | |||| || |||||||||||||||  || ||||| | ||||||||    
T  16957707 ggattaggggtcgggcctcttacagtaggataggcagtcctaaaagttgcgtagagcaaaatgaccaaacatgagaaagtgtgctctgataatcaacatg 16957608  T
Q  182 tttttataccatttgtttttgacacttt 209  Q
     || ||||||||||| ||||||||||||    
T  16957607 cttatataccatttgcttttgacacttt 16957580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 43849350 - 43849426
Alignment:
Q  142 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||| |||||||| ||||| || |  ||||||| |||||||| |||||| |||||||||||||| |||||    
T  43849350 gtggccaaacacgagaaagcgtgttcagataaccaacatgcttttatactatttgtgtttgacacttttggcttcct 43849426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 24720017 - 24719970
Alignment:
Q  164 gttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  24720017 gttctgacaatcaacatgtttttatatcatttgtgtttgacacttttg 24719970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 50483211 - 50483274
Alignment:
Q  155 agaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||| | |||||||| |||||||| |||||||||||||| ||| |||||||| ||||||||    
T  50483211 agaaagcgtcttctgacaatcaacatgattttataccatttgctttcgacactttcggtttcct 50483274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 38535500 - 38535610
Alignment:
Q  54 agacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacat 153  Q
    ||||||||| ||  |||||| |||  ||||||| | ||||||||||||||  ||||  |||||||| ||||||||||  || |||||||||| |||| ||    
T  38535500 agacttgactagggtttcactacttgtgggatttgaggttggggcttttaatgtagaacagacagctctaaaagttgtgtctaacaaagtggtcaaatat 38535599  T
Q  154 gagaaagcatg 164  Q
     ||||||||||    
T  38535600 aagaaagcatg 38535610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 46440869 - 46440967
Alignment:
Q  120 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||||||  | ||||||||||||| ||||||| | ||||  |||||| ||| | |||| ||||||||| |||||| |||||||||||| || |||||    
T  46440869 cctaaaagtaacgtcaaacaaagtggtcaaacataaaaaagtgtgttctaacaattaacacgtttttatatcatttgcttttgacactttcggcttcct 46440967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 28740020 - 28739943
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt-ttttataccatttgtttttgacacttt 209  Q
    ||||| |||||||||||||| ||||||   |||| ||||||| ||||||| ||||||||||||| | |||||||||||    
T  28740020 tcaaataaagtggccaaacacgagaaattgtgttgtgacagttaacatgtgttttataccatttatgtttgacacttt 28739943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 3330077 - 3330025
Alignment:
Q  166 tctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||    
T  3330077 tctgacaatcaacatgcttttatactatttgcttttgacacttttggcttcct 3330025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 30940841 - 30940897
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtt 282  Q
    |||||||| ||||||||| ||||||||||||  ||| |||||| |||||||||||||    
T  30940841 agttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgtt 30940897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 7536594 - 7536649
Alignment:
Q  163 tgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| |||  |||||||    
T  7536594 tgttttgacaatcaacatgtttttatacaatttgtttttgacaatttcagtttcct 7536649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 4419261 - 4419195
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||||||| ||||| |||||||| ||  |||| |||||  |||||||||||||||||| ||||    
T  4419261 agttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgatt 4419195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 46391323 - 46391369
Alignment:
Q  148 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 194  Q
    ||||| |||||| |||||||| |||| ||||||||||||||||||||    
T  46391323 aaacacgagaaaacatgttctcacagccaacatgtttttataccatt 46391369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 52022228 - 52022166
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 195  Q
    |||| ||||||| ||||| |||||| |   ||||||||||||| |||||||||||||||||||    
T  52022228 tcaatcaaagtgaccaaaaatgagagaaagtgttctgacagtcgacatgtttttataccattt 52022166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 6865828 - 6865889
Alignment:
Q  148 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||||| |||||| | |||||||||  |||||||| ||||||| |||||| ||||||||||||    
T  6865828 aaacacgagaaaacgtgttctgactatcaacatgcttttatatcatttgcttttgacacttt 6865889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 45386060 - 45386133
Alignment:
Q  139 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 212  Q
    ||||||| ||||||| ||||||| |||||||||| ||||  | ||||||||||||||   ||||| ||||||||    
T  45386060 aaagtggtcaaacataagaaagcgtgttctgacaatcaatttctttttataccatttacatttgaaacttttgg 45386133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 4e-41; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 33220639 - 33220789
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||| |||      
T  33220639 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacagctctaaaagctgcatcaagcaaagtggccaaacatgagaaagcgtgtgt 33220738  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| |||||||| |||||||||||||| |||||||||||| || |||||    
T  33220739 tgacaatcaacatgcttttataccatttgcttttgacactttcggcttcct 33220789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 17249262 - 17249383
Alignment:
Q  97 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 196  Q
    |||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||| ||||||||||||||    
T  17249262 gcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttg 17249361  T
Q  197 tttttgacacttttggtttcct 218  Q
     ||||||||||||||| |||||    
T  17249362 cttttgacacttttggcttcct 17249383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 959759 - 959609
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    |||||||||| ||||||||||| || ||| ||||||||||||| || ||| ||||||||||||  |||| ||||||||| || ||||||||| | |||||    
T  959759 tttcaccacttatgggattaggtgtcgggccttttacggtaggacaaacaaccctaaaagttgtgtcaagcaaagtggctaaccatgagaaaacgtgttc 959660  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| ||||||||| |||||||||||||||||||||| ||| ||||||||    
T  959659 tgacaatcaacatgtctttataccatttgtttttgacattttcggtttcct 959609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 357645 - 357788
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||||||| || |||||||||||||| ||| |||||||||||| | | |||| |||||||||||||||||||||||| |||||    
T  357645 tttcaccacttgtgggtttaggggtcggtgcttttacggtaggacaggcagccctaaaagcttcgtcaagcaaagtggccaaacatgagaaagcgtgttc 357744  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    ||||| | |||||| ||||||| | ||||||||| |||||||||    
T  357745 tgacaatgaacatgcttttataacctttgtttttaacacttttg 357788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 45605 - 45753
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||||||||| || ||  ||||||| ||||| ||| |||| ||||||| |||||||| |||||||  ||||||||||||| | |||||    
T  45605 tttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaggcagctctaaaagctgcatcaagcaaagtgatcaaacatgagaaaacgtgttc 45704  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 216  Q
    ||||| |||||||| |||||| |||||||||||||||||||| ||||||    
T  45705 tgacaatcaacatgcttttattccatttgtttttgacactttcggtttc 45753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 4206466 - 4206674
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    |||||||||||||||||||||||  ||||||| ||  ||| ||||||||||||  |  ||||||||||  ||||||||||  |  |  ||||||||||||    
T  4206466 gatgttatggtgtacaaatgggttggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggcatcagaccttttacggtag 4206565  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    | ||  ||||| ||||||| || |||| ||||||||| |||||||||||||| |||||||||| | |||||| ||||||| |||||| ||||||||||||    
T  4206566 gacatgcagccttaaaagtggcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacacttt 4206665  T
Q  210 tggtttcct 218  Q
     || |||||    
T  4206666 cgggttcct 4206674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 34304675 - 34304525
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| ||||| || |||||||||||||| || |||  ||||||||||| ||| |||| |||| |  |||||||||||||||| |||||    
T  34304675 tttcaccacttgtgggtttaggagtcggggcttttacggttggacagctagccctaaaagctgcgtcaagcaaaataaccaaacatgagaaagcgtgttc 34304576  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| |||||||| |||||||||||||| |||||||||||| || |||||    
T  34304575 tgacaatcaacatgcttttataccatttgcttttgacactttgggcttcct 34304525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 28008915 - 28009062
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||  || ||||||||| | | |||| ||||| || ||||||||||||||| |||||    
T  28008915 tttcaccactcgtgggattaggggtcggggcttttacggtaggacatgcaaccctaaaagctacgtcaagcaaagcggtcaaacatgagaaagcttgttc 28009014  T
Q  168 tgacagtc---aacatgtttttataccatttgtttttgacacttttgg 212  Q
    | ||| ||   || ||| |||||||||||||| |||||||||||||||    
T  28009015 taacaatcaagaatatggttttataccatttgcttttgacacttttgg 28009062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 32115926 - 32115650
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    |||||||||||||||| ||| ||| ||||||| ||  ||| ||||||||||||| |  ||||| |||| ||||||||||| || |||  ||||||| |||    
T  32115926 gatgttatggtgtacagatgagtaggaggaaaacatgcatgtgtagacttgaccggggtttcatcacttatgggattaggtgtcgggcattttacgttag 32115827  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga-cactt 208  Q
    | ||  ||||| |||||||||| ||||||||||||||||||||||||||||  ||||        ||||||| ||||| |||||||| |||||| ||       
T  32115826 gacatgcagccttaaaagttgcgtcaaacaaagtggccaaacatgagaaag--tgtt-------gcaacatgcttttagaccatttgcttttgaccatgg 32115736  T
Q  209 ttggtttccttctacaa--agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
     || |  ||||||||||  |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||||| ||||    
T  32115735 ctgttgaccttctacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgatt 32115650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 34415615 - 34415465
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||| | | |||||||||||  || |||||||||||||  || || || || ||| ||| |||| |||| |||| |||||||||||||  |||||    
T  34415615 tttcaccacacgttggattaggggtcaggacttttacggtaggataggcatccttacaagctgcgtcaagcaaaatggcgaaacatgagaaagtgtgttc 34415516  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| |||||||| |||||| |||||||||||||||||||| ||||||||    
T  34415515 tgacaatcaacatgcttttatgccatttgtttttgacactttaggtttcct 34415465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 12401572 - 12401384
Alignment:
Q  7 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 105  Q
    |||| ||||||||||||||  ||||||| ||||||| ||  ||| |||||||||||   |  |||||||||| ||||||||| || |  ||||||||| |    
T  12401572 tgcaaatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgattggggtttcaccacttatgggattatggttcagggcttttatg 12401473  T
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 194  Q
    ||||| ||  |||| ||||||||||| ||||||||||||||||||||| ||| ||| |||| ||  | |||||||| || |||||||||    
T  12401472 gtaggacaagcagcactaaaagttgcgtcaaacaaagtggccaaacataagatagcgtgttttgctaatcaacatgcttatataccatt 12401384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 34169021 - 34168913
Alignment:
Q  94 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 193  Q
    ||||||||||| ||||| ||  || |||||||| |||| |||| |||||||||||||||||||||||||||||  ||||  ||||||| |||||||||||    
T  34169021 ggggcttttaccgtaggacatgcaaccctaaaatttgcgtcaagcaaagtggccaaacatgagaaagcatgtttggacaagcaacatgcttttataccat 34168922  T
Q  194 ttgtttttg 202  Q
    ||| |||||    
T  34168921 ttgcttttg 34168913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 24016472 - 24016366
Alignment:
Q  112 cagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||||| || |||||||||||||||  ||| | | ||||||||||||||| |||||| ||| ||||||||||||||||||||||| | |||| | |||||    
T  24016472 cagacaaccgtaaaagttgcatcaagtaaaatagtcaaacatgagaaagcttgttctcacaatcaacatgtttttataccatttgctattgatagttttg 24016373  T
Q  212 gtttcct 218  Q
    |||||||    
T  24016372 gtttcct 24016366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 34554217 - 34554343
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    ||||||||||| |  |||||||||  ||||| |||||| | ||||||||||| |||| ||||  | |||||||||||||||| |||||||| | |||| |    
T  34554217 tgggattagggatcagggcttttaaagtaggtcagacaacactaaaagttgcgtcaagcaaaacgaccaaacatgagaaagcgtgttctgataatcaaga 34554316  T
Q  180 tgtttttataccatttgtttttgacac 206  Q
    ||||||||||||||||  |||||||||    
T  34554317 tgtttttataccatttacttttgacac 34554343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 4165920 - 4166000
Alignment:
Q  138 caaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||| |||||||||||||| |||||||||| |||||||| ||||||| |||||| |||||||||||| || |||||    
T  4165920 caaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcct 4166000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 28543554 - 28543413
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  ||||||||| |||  || ||||||||||| | ||| ||||| ||||||| || |||| |||||||||||||||||||||| | ||||     
T  28543554 tttcaccacttgtgggattagaggtcaggacttttacggtaagacaggcagccttaaaagtcgcgtcaagcaaagtggccaaacatgagaaatcgtgttt 28543455  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||| | |||  ||| | |||||| ||||| ||||||||||||    
T  28543454 tgaaaatcactatgctcttatactatttgattttgacacttt 28543413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 29338022 - 29338147
Alignment:
Q  83 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 182  Q
    |||||| ||| ||||||||||||||||| || |||  | |||||| ||  |||| |||||  ||||||||||||||| | |||||| ||| ||||||||     
T  29338022 gattagtggtcggggcttttacggtaggacaaacaatcataaaagatgtgtcaagcaaagctgccaaacatgagaaaacgtgttctaacaatcaacatgc 29338121  T
Q  183 ttttataccatttgtttttgacactt 208  Q
    | |||||||||||| |||||||||||    
T  29338122 tcttataccatttgcttttgacactt 29338147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 20693467 - 20693610
Alignment:
Q  7 tgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacgg 106  Q
    ||||||| |||||||||||| ||||||| |||||||   |  | |||  |||||| |||  ||||||||||| ||||||||| |||  | |||||||| |    
T  20693467 tgcagatattatggtgtacagatgggtaggaggaaaacatgctatgtgaacttgatcagggtttcaccactcgtgggattagaggtctgagcttttacag 20693566  T
Q  107 tagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    |||  || || |||||||| ||||||||||||||||||||||||    
T  20693567 tagaacatacggccctaaaggttgcatcaaacaaagtggccaaa 20693610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 3715042 - 3714953
Alignment:
Q  122 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||||||||  ||||||||| |||  |||||||||||| | |||||| ||| | |||||||||||||| ||| |||||||||||||||||    
T  3715042 taaaagttgtgtcaaacaaaatggttaaacatgagaaaacgtgttctcacaattaacatgtttttatatcatctgtttttgacacttttg 3714953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 29338189 - 29338247
Alignment:
Q  227 gttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 285  Q
    ||||||||||||||||||| ||||||||| ||||| |||||  ||||||||||||||||    
T  29338189 gttcaaagggtcatgcacatcaatgtcatgactcctaggtccatgaatgttgtgtttac 29338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 28626062 - 28625968
Alignment:
Q  116 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgttttt-ataccatttgtttttgacacttt 209  Q
    ||||||| |||| ||| ||||  || ||||| ||||| |||||| | |||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  28626062 cagcccttaaagctgcgtcaagtaaggtggctaaacacgagaaaacgtgttctgacaatcaacattttttttataccatttgttttttacacttt 28625968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 28625930 - 28625863
Alignment:
Q  224 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||||| ||||||||| |||| ||||||| |||  |||||| ||||||||||||||||| |||||    
T  28625930 aaagttcaaaaggtcatgcataaca-tgtcatatctcataggtctatgaatgttgtgtttacggagatt 28625863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 6225191 - 6225108
Alignment:
Q  128 ttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||| ||||| ||||||| |||||||||||||   |||| ||||| |||||||| || |||  ||||||| |||||||||||||    
T  6225191 ttgcgtcaaataaagtggtcaaacatgagaaattttgttgtgacaatcaacatgcttatatgtcatttgtgtttgacacttttg 6225108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 28009096 - 28009155
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 285  Q
    ||||||||||||||| |||||||||||||| ||||| |||||  |||| ||||| |||||    
T  28009096 agttcaaagggtcatacacaacaatgtcatgactcctaggtccatgaacgttgtctttac 28009155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 7200540 - 7200607
Alignment:
Q  143 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 212  Q
    ||||||||||||||||| |  ||||  ||| |||||||||||||||  ||||||| ||||||||||||||    
T  7200540 tggccaaacatgagaaatcgagttcaaacaatcaacatgtttttat--catttgtgtttgacacttttgg 7200607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 4e-41; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 34644745 - 34644595
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| ||  || ||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  34644745 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacaagcaaccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagcgtgttc 34644646  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||  | ||||| ||||||||||||||||||||||||||| || |||||    
T  34644645 tgacaacctacatgcttttataccatttgtttttgacactttcggcttcct 34644595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 19035643 - 19035476
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    ||||||||||||  | ||||||||| |  |||||||||| || ||  ||||||| ||||||||| |||||||||||| ||| |||| |||||||||||||    
T  19035643 tgtagacttgactgggatttcaccagttgtgggattaggtgtcggaccttttaccgtagggcaggcagccctaaaagctgcgtcaagcaaagtggccaaa 19035544  T
Q  151 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||  |||||||||||  ||||||||    
T  19035543 catgagaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacacttacggtttcct 19035476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 50161288 - 50161478
Alignment:
Q  12 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 110  Q
    ||||||||||||||   |||||||||| ||| ||  ||| ||| ||||| |||  ||||||||||||| ||| |||||||| || | |||||||||||||    
T  50161288 atgttatggtgtacggttgggtaagagaaaaacatgcatgtgtggacttaaccgatatttcaccactcgtggaattaggggctgagacttttacggtagg 50161387  T
Q  111 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 201  Q
     |||||| ||||||||||||| |||| |||||||| ||||||||||||||| |||||| ||| |||||||| ||||||| ||||| |||||    
T  50161388 acagacaaccctaaaagttgcgtcaagcaaagtggacaaacatgagaaagcgtgttctcacaatcaacatgcttttatatcattttttttt 50161478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 28040993 - 28041205
Alignment:
Q  7 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 105  Q
    |||||||||||||||||||| ||||||| | ||||| ||  | | ||||||||||||  |  |||||| |||  |||||||||| || ||  |||||||     
T  28040993 tgcagatgttatggtgtacagatgggtaggtggaaaacatgcttgtgtagacttgactggggtttcactacttgtgggattaggtgtcggaccttttacc 28041092  T
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    |||||  || |||| ||||||   || ||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||| ||||||||    
T  28041093 gtaggataggcagctctaaaatccgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacaggtttttataccatttgcttttgaca 28041192  T
Q  206 cttttggtttcct 218  Q
    |||| ||||||||    
T  28041193 ctttcggtttcct 28041205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 29169664 - 29169871
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    |||||||||||||||  || |||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  |||||||||| || ||| ||||||| ||||    
T  29169664 gatgttatggtgtacggataggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccactt-tgggattaggtgtcgggccttttaccgtag 29169762  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    | ||||||||||| |||||||  ||||  || ||||||||||| |||||| | |||||||||| |||||||| |||||||||||||| ||||||||||||    
T  29169763 gacagacagcccttaaagttgtgtcaagtaaggtggccaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 29169862  T
Q  210 tggtttcct 218  Q
     ||||||||    
T  29169863 cggtttcct 29169871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 25375751 - 25375911
Alignment:
Q  58 ttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgaga 157  Q
    ||||||||  |||||| |||| | |||||||||||  | |||||||||||||| |||||| | | ||||||||| |||| ||||||| |||||||||| |    
T  25375751 ttgaccagggtttcactactcgtcggattaggggtcagagcttttacggtaggacagacaactccaaaagttgcgtcaagcaaagtgaccaaacatgaca 25375850  T
Q  158 aagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    || |||||||| ||  ||||||||||||||||||||||| | ||||||||||||| |||||    
T  25375851 aaacatgttcttaccatcaacatgtttttataccatttgctattgacacttttggcttcct 25375911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 42920039 - 42919890
Alignment:
Q  67 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 166  Q
    ||||||| |||| |||||||| |||| || ||||||| | |||| || ||| |||||||||||||||||||||||| |||||||||||||||| | ||||    
T  42920039 atttcactactcgtgggattacgggtcggagcttttatgataggacaaacaaccctaaaagttgcatcaaacaaagcggccaaacatgagaaa-cgtgtt 42919941  T
Q  167 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 217  Q
    || ||| |||||||||||||||  ||| || |||||||||||||| |||||    
T  42919940 ctcacaatcaacatgtttttatgtcatctgcttttgacacttttgatttcc 42919890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 45659511 - 45659726
Alignment:
Q  5 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 103  Q
    |||||| ||||||| ||||||| ||||||| ||||||| ||  |||  |||||||||||  |  ||||||||||  ||||||||||  | ||| ||||||    
T  45659511 catgcacatgttatagtgtacagatgggtaggaggaaaacatgcatgcgtagacttgactggggtttcaccacttgtgggattaggtatcgggcctttta 45659610  T
Q  104 cggtagggcagacagccct-aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttg 202  Q
    | ||||| ||  ||||||| ||||| ||| ||||  || ||||||||||| |||||||| |||||||||| |||||||| |||||||||||||| |||||    
T  45659611 ccgtaggacatgcagcccttaaaagctgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttg 45659710  T
Q  203 acacttttggtttcct 218  Q
    ||||||| | ||||||    
T  45659711 acactttcgatttcct 45659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 31737281 - 31737392
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    ||||||||||| |  | || ||||||||||  || |||| |||||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||    
T  31737281 cttttacggtaagataaacggccctaaaagcggcgtcaagcaaagtggccaaacatgagaaaacatattctgacaatcaacatgcttttataccatttgt 31737380  T
Q  198 ttttgacacttt 209  Q
    ||||||||||||    
T  31737381 ttttgacacttt 31737392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 2764658 - 2764517
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| ||||||||||| ||||||| ||||||  || ||| |||||||||||  ||| ||||||||| ||||||||||||| | |||||    
T  2764658 tttcaccacttgtgggtttaggggttggtgcttttatggtaggataggcagtcctaaaagttgtgtcagacaaagtggtcaaacatgagaaaacgtgttc 2764559  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
     |||| |||||||| |||||| ||||||  ||||||||||||    
T  2764558 cgacaatcaacatgcttttatgccattttcttttgacacttt 2764517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 37200217 - 37200011
Alignment:
Q  12 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 110  Q
    ||||||||| |||| |||||||||||||||| ||  ||| ||| ||||||||   | ||||||||||| |||||||| ||   || ||||||||  ||||    
T  37200217 atgttatggggtaccaatgggtaagaggaaaacatgcatgtgt-gacttgactgatgtttcaccactcgtgggattaaggaccggagcttttacaatagg 37200119  T
Q  111 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 210  Q
     ||  ||||| |||||||| | ||||  ||||||| ||||||| ||||||||||| || ||| |||| ||||||||||||||||||||||| ||||||||    
T  37200118 acatgcagccataaaagttacgtcaagtaaagtggtcaaacataagaaagcatgtgctaacaatcaatatgtttttataccatttgttttt-acactttt 37200020  T
Q  211 ggtttcctt 219  Q
    || ||||||    
T  37200019 ggcttcctt 37200011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 21473107 - 21473042
Alignment:
Q  143 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 208  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  21473107 tggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactt 21473042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 20259774 - 20259873
Alignment:
Q  117 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 216  Q
    ||||||||||| | | |||| ||||||||  ||| |||||||||| |||||||||| |||||||||||||||||||||| || |||||||||| ||||||    
T  20259774 agccctaaaagctacgtcaagcaaagtggttaaaaatgagaaagcgtgttctgacaatcaacatgtttttataccatttattgttgacactttcggtttc 20259873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 4861857 - 4862067
Alignment:
Q  9 cagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggt 107  Q
    |||||||||||||||||  ||||||| ||| ||| ||  ||| ||| || |||||  || ||||||||||  | |||||||||||   | | |||| |||    
T  4861857 cagatgttatggtgtacggatgggtaggagaaaaacatgcatgtgtggatttgactggtgtttcaccacttgttggattaggggtcttgacatttatggt 4861956  T
Q  108 agggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacact 207  Q
    ||| ||||||||| |||||||||| ||||  ||| ||| ||||||||||||||| | ||||||||  ||||||  |||||||| ||||| ||||||||||    
T  4861957 aggacagacagccttaaaagttgcgtcaagtaaaatggtcaaacatgagaaagcgtcttctgacaagcaacatacttttatacaatttgcttttgacact 4862056  T
Q  208 tttggtttcct 218  Q
    || | ||||||    
T  4862057 ttcgatttcct 4862067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 22347022 - 22346924
Alignment:
Q  120 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||   |||| ||||||||||||| |||||||||| |||||||||| ||||||||  |||||||| |||| |||||||||||| ||||||||    
T  22347022 cctaaaagttatgtcaagcaaagtggccaaatatgagaaagcgtgttctgacaatcaacatgcgtttataccttttgcttttgacactttcggtttcct 22346924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 16500187 - 16500070
Alignment:
Q  94 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 193  Q
    ||||||||||||||||| ||||||  |||||||||||| |||   |||||||||||| || ||||| |||||||| ||| | ||||||  ||||||| ||    
T  16500187 ggggcttttacggtaggacagacaatcctaaaagttgcgtcacgtaaagtggccaaatataagaaaacatgttctaacaattaacatgcctttatactat 16500088  T
Q  194 ttgtttttgacacttttg 211  Q
    ||| ||||||||||||||    
T  16500087 ttgcttttgacacttttg 16500070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 2898833 - 2898731
Alignment:
Q  119 ccctaaaagttgcatcaaacaaagtggccaaacatgagaa----agcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 214  Q
    ||||||||| |||||||| |||||||||||||||||||||    ||| |||||||||| |||| | |||||||||||||||| |||||| ||||| ||||    
T  2898833 ccctaaaagatgcatcaagcaaagtggccaaacatgagaaagtgagcgtgttctgacaatcaata-gtttttataccatttgcttttgatactttcggtt 2898735  T
Q  215 tcct 218  Q
    ||||    
T  2898734 tcct 2898731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 36487011 - 36486918
Alignment:
Q  122 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 215  Q
    ||||| |||||||||  ||||||| |||| |||||||||| |||| ||||| |||| || ||||||||  ||||| ||||||||||||||||||    
T  36487011 taaaaattgcatcaagtaaagtggtcaaatatgagaaagcgtgttttgacaatcaatatctttttatataatttgcttttgacacttttggttt 36486918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 38731607 - 38731546
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 287  Q
    ||||||||||||||||||||| |||||||| ||||| |||||  ||||| ||||||||||||    
T  38731607 agttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgtttacga 38731546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 23044005 - 23043929
Alignment:
Q  119 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 195  Q
    |||| |||| |||||||| ||||||||||||| |||||||| || || || ||| |||||||| |||||||||||||    
T  23044005 ccctcaaagctgcatcaagcaaagtggccaaatatgagaaaacaagtactcacaatcaacatgcttttataccattt 23043929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 37932146 - 37932264
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  ||||||||||||    ||||||||| ||| | |||||||||||||||||||  |||| |||| ||| |||| | |||||||  |||||    
T  37932146 tttcaccacttgtgggattaggggccaaggcttttacagtaagacagacagccctaaaagttgtgtcaagcaaaatggtcaaatacgagaaag-gtgttc 37932244  T
Q  168 tgacagtcaacatgttttta 187  Q
    ||||| ||||| ||||||||    
T  37932245 tgacaatcaacgtgttttta 37932264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 24177540 - 24177589
Alignment:
Q  169 gacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||| ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  24177540 gacaatcaacatatttttataccatttgtttttgacagtttcggtttcct 24177589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 50314613 - 50314694
Alignment:
Q  129 tgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 210  Q
    ||||| || |||||||| ||||||||| ||| | |||||| ||| |||||||| |||||||||||||  |||||||| ||||    
T  50314613 tgcataaagcaaagtggtcaaacatgacaaaacttgttctcacaatcaacatgcttttataccatttacttttgacattttt 50314694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 35387643 - 35387710
Alignment:
Q  123 aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 190  Q
    |||| ||||||||| |||||||||||||||||| ||||  |||||||||  |||||| | ||||||||    
T  35387643 aaaatttgcatcaagcaaagtggccaaacatgaaaaagtgtgttctgacgatcaacaagcttttatac 35387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 7213341 - 7213279
Alignment:
Q  157 aaagcatgttctgacagtcaacatgttttt-ataccatttgtttttgacacttttggtttcct 218  Q
    |||||||||||||| | | ||||||||||| ||| ||||| ||||||||||||| ||||||||    
T  7213341 aaagcatgttctgataattaacatgttttttatatcatttatttttgacactttcggtttcct 7213279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 19035458 - 19035424
Alignment:
Q  148 aaacatgagaaagcatgttctgacagtcaacatgt 182  Q
    ||||||||||||||||||||||||| |||||||||    
T  19035458 aaacatgagaaagcatgttctgacaatcaacatgt 19035424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 47459753 - 47459711
Alignment:
Q  176 aacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||||||||||||| |||||| |||||||| |||||    
T  47459753 aacatgtttttataccatttgcttttgatacttttggcttcct 47459711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 3e-39; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 38815471 - 38815332
Alignment:
Q  70 tcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctg 169  Q
    ||||||||  ||||||||||||| |||||||||| |||||| ||||||||||||||||   |  |||||||||||||||||||||||||||| |||||||    
T  38815471 tcaccacttgtgggattaggggtcggggcttttatggtaggacagacagccctaaaagccacgccaaacaaagtggccaaacatgagaaagcgtgttctg 38815372  T
Q  170 acagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||| |||||||| |||||||||||||| ||||||||||||    
T  38815371 acaatcaacatgcttttataccatttgcttttgacacttt 38815332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 39434846 - 39434703
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||||||| | ||||||||| ||||| |||  ||| ||||||||||| |||| |||||||||||||||||||||||| |||||    
T  39434846 tttcaccacttgtgggtttaggggtggaggcttttacagtaggacaggaagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttc 39434747  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  39434746 tgacaatcaacatgcttttataccatttgtttttgacacttttg 39434703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 500406 - 500256
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||||||||| || ||| ||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||| | |||||    
T  500406 tttcaccacttgtgggattaggtgtcgggccttttacggtaggaccgacagccctaaaagttgcgtcaagcaaagtggccaaacatgagaaaacgtgttc 500307  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| |||||||| |||||||||||||  |||||||| ||| ||||||||    
T  500306 tgacaatcaacatgcttttataccatttacttttgacattttcggtttcct 500256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 35739851 - 35740064
Alignment:
Q  5 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 103  Q
    ||||||||||||||||||||  |||||||| ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||||||| || | ||| ||||||    
T  35739851 catgcagatgttatggtgtatgaatgggtaggaggaaaacatgcatgtgtggacttgactggggtttcaccactagtgggattaagg-tcgggcctttta 35739949  T
Q  104 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 203  Q
    ||||||| |||||| ||||||||||||  | || ||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||| | ||||||    
T  35739950 cggtaggacagacatccctaaaagttgtgttaagcaaagtggccaaacatgagaaagcgggttctgacaatcaacatgtttttatacaattagcttttga 35740049  T
Q  204 cacttttggtttcct 218  Q
    ||||||  |||||||    
T  35740050 cactttcagtttcct 35740064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 25021680 - 25021892
Alignment:
Q  7 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 105  Q
    |||||||||||||||||||  ||||||| ||||||| ||  ||| ||| ||||||||| |  ||||||||||  ||||||||||||| |  | ||||||     
T  25021680 tgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtggacttgaccggagtttcaccacttgtgggattaggggtcgatgtttttaca 25021779  T
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    ||| | || ||||||||||||||||  |||| ||||||||  ||| |||||||||  |||||| ||| ||||||||||||||||||||||  ||||||||    
T  25021780 gtatgacatacagccctaaaagttgtgtcaagcaaagtggtgaaatatgagaaagtgtgttctcacaatcaacatgtttttataccattttcttttgaca 25021879  T
Q  206 cttttggtttcct 218  Q
     |||||| |||||    
T  25021880 tttttggcttcct 25021892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 3188148 - 3187998
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagcc-ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 166  Q
    ||||||||||  |||| |||||| | ||||||||||||||||| |||  |||| |||||||||||||||| ||||||||| ||||||||| |||| ||||    
T  3188148 tttcaccacttgtgggtttaggg-tcggggcttttacggtaggacaggaagcctctaaaagttgcatcaagcaaagtggcaaaacatgaggaagcgtgtt 3188050  T
Q  167 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||| |||||||| |||||||||||||| |||||| ||||| || |||||    
T  3188049 ctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcct 3187998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 24125224 - 24125057
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    ||||||||||||  |  ||||||||||  |||||||| | || | | |||||||||| || ||  |||||||||||| |||||||| |||| ||||||||    
T  24125224 tgtagacttgactggggtttcaccacttgtgggattatgcgtcgtgccttttacggtgggacaagcagccctaaaagctgcatcaagcaaaatggccaaa 24125125  T
Q  151 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||| || ||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||    
T  24125124 catgagaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttgatttcct 24125057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 6592724 - 6592604
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    |||||||| ||||  |||||| | |||||| ||| |||| |||||||||||||||||||||||| |||||| ||| |||||||| ||||| ||||||||     
T  6592724 cttttacgataggatagacagtcgtaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgc 6592625  T
Q  198 ttttgacacttttggtttcct 218  Q
    ||||||||||||  |||||||    
T  6592624 ttttgacactttcagtttcct 6592604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 8620047 - 8619849
Alignment:
Q  9 cagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggta 108  Q
    ||||||||||||||||| ||||||||||||||||     || |||  |||||||  |  ||||||||||  ||||||||| | | | | |||||||| ||    
T  8620047 cagatgttatggtgtacgaatgggtaagaggaaa-----atgtgtgaacttgactggggtttcaccacttgtgggattagagatcgtgacttttacgata 8619953  T
Q  109 gggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 208  Q
    |  |||||||||||||||||||| ||||  ||| ||| ||||||||| ||||| | || ||||| ||||| || ||||||||||||||||||| ||| ||    
T  8619952 gaacagacagccctaaaagttgcgtcaagtaaaatggtcaaacatgaaaaagcgtattttgacaatcaacgtgcttttataccatttgtttttaacattt 8619853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 10189707 - 10189572
Alignment:
Q  83 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 182  Q
    |||||||||||  |||||||| |||||| || |||  ||||||||||||  |||  ||||| | |||||| ||||||||||||||||||| |||||||||    
T  10189707 gattaggggttaaggcttttatggtaggacatacattcctaaaagttgcgccaattaaagtagtcaaacaagagaaagcatgttctgacaatcaacatgt 10189608  T
Q  183 ttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||| ||||||  ||||||| |||||| |||||    
T  10189607 ttttatatcatttgcatttgacatttttggcttcct 10189572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 4073685 - 4073571
Alignment:
Q  97 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 196  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||| |||||| |||||| | |||| |  || |||||||| |||||||| |||||    
T  4073685 gcttttacggtggaacagacaaccctaaaagttgcatcaaacaaagtggtcaaacaagagaaaacgtgttttaccaatcaacatgattttatacaatttg 4073586  T
Q  197 tttttgacacttttg 211  Q
      |||||||||||||    
T  4073585 catttgacacttttg 4073571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 8882441 - 8882371
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 203  Q
    |||| |||||||||||||||||||||||| |||||||||| |||| ||| ||||| |||||||||||||||    
T  8882441 tcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaatatgcttttaaaccatttgtttttga 8882371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 28196324 - 28196228
Alignment:
Q  115 acagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||| |||||||  ||||||||  |||| ||| |||||||||||||  |||| ||| | | ||||||||||||||||||||||||||||||||||||    
T  28196324 acagtcctaaaaactgcatcaagtaaagcggctaaacatgagaaagtgtgttatgataataaacatgtttttataccatttgtttttgacacttttg 28196228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 37517243 - 37517163
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaac 178  Q
    ||||||| ||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||  ||||| |||| |||||    
T  37517243 cttttaccgtaggacagacagctctaaaagctgcatcaagcaaagtggccaaacatgagaaagggtgttccgacaatcaac 37517163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 25021919 - 25021982
Alignment:
Q  222 acaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 285  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||    
T  25021919 acaaagttcaaagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttac 25021982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 287
Target Start/End: Original strand, 42922103 - 42922273
Alignment:
Q  116 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 215  Q
    ||||| |||||||||| ||||||||| ||| ||||  ||||||| | |||| ||||| |||| ||| ||||| | ||||||  |||||||||||||| ||    
T  42922103 cagccataaaagttgcgtcaaacaaaatggtcaaatttgagaaaacgtgttttgacaatcaaaatgcttttaaatcatttgcctttgacacttttggctt 42922202  T
Q  216 ccttctacaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 287  Q
    |||   | | |||| |||  || |||||||||||||||||||||||  ||||  ||||| ||||||||||||    
T  42922203 cctaacatagagtttaaa-agttatgcacaacaatgtcataactcctcggtccatgaatattgtgtttacga 42922273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 6618409 - 6618313
Alignment:
Q  122 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||||||| ||||| | ||| |  |||||||||||||| |||||| ||| |||||||| ||||| |||||||| ||||||||||||  |||||||    
T  6618409 taaaagttgcgtcaaatagagtagttaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcct 6618313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 11611199 - 11611275
Alignment:
Q  95 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgac 171  Q
    ||||||||||| || |  ||||| ||||||||||||  ||||| |||||||||||| ||||||||||||||||||||    
T  11611199 gggcttttacgataagatagacatccctaaaagttgtgtcaaataaagtggccaaatatgagaaagcatgttctgac 11611275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 10556283 - 10556361
Alignment:
Q  130 gcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 208  Q
    |||||||| ||||||| ||||||||||||| ||| |||||| | ||||||||||||||||  | |||| ||||||||||    
T  10556283 gcatcaaagaaagtggtcaaacatgagaaaacatattctgaaaatcaacatgtttttatataaattgtatttgacactt 10556361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 38815292 - 38815226
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||||||||||||| | |||||||||  |||| |||||  |||||||||||||||||| ||||    
T  38815292 agttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 38815226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 4700002 - 4699919
Alignment:
Q  113 agacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    ||||| |||| |||||||  |||| ||||||||||||||||||  |||| |||||| ||| | |||||||||||| |||||||||    
T  4700002 agacaaccctcaaagttgtgtcaagcaaagtggccaaacatga-taagcgtgttctcacaattaacatgtttttacaccatttgt 4699919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 43824056 - 43824017
Alignment:
Q  180 tgtttttataccatttgtttttgacacttttggtttcctt 219  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  43824056 tgtttttataccatttgcttttgacacttttggcttcctt 43824017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 39671170 - 39671232
Alignment:
Q  139 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 201  Q
    |||||||||||||  |||||||| |||| ||||| | ||||||||||||||| |||| |||||    
T  39671170 aaagtggccaaaccagagaaagcgtgttttgacaattaacatgtttttatacaatttattttt 39671232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 8390291 - 8390234
Alignment:
Q  96 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacat 153  Q
    |||||||| | ||||||||||| |||||||| |||| | |||||||||| ||||||||    
T  8390291 ggcttttatgatagggcagacaaccctaaaaattgcgtaaaacaaagtgaccaaacat 8390234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 3e-39; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 28517215 - 28517358
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||||||| ||||||||||| ||||| |||||| ||||||||| ||| |||| |||||||||||||||||||||||| ||||     
T  28517215 tttcaccacttgtgggtttaggggtgggggcttttacagtaggacagacaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttt 28517314  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
     |||| ||||||||||||||||||||||| ||||||||||||||    
T  28517315 agacaatcaacatgtttttataccatttgcttttgacacttttg 28517358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 4501495 - 4501296
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    |||||||||||||||  || |||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  |||||||||| || ||| ||||||| ||||    
T  4501495 gatgttatggtgtacggataggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcgggccttttaccgtag 4501396  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    | || ||| ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||  ||||| ||||||||||||    
T  4501395 gacaaacaaccctaaaagctgcgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatataatttgcttttgacacttt 4501296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 21326766 - 21326916
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||||||||| || ||  ||||||| ||||| || |||||||||||||  || |||| |||||||||||||||||||||||| |||||    
T  21326766 tttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaaacagccctaaaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgttc 21326865  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| |||||||| |||||||||||||| |||||||||||| | ||||||    
T  21326866 tgacaatcaacatgcttttataccatttgcttttgacactttcgatttcct 21326916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 45613712 - 45613919
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    ||||||||| ||||| |||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  | |||||||| || ||| ||||| | ||||    
T  45613712 gatgttatgatgtacgaatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtaggattaggtgtcgggcctttttccgtag 45613811  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    | |||||| ||||||||||||| ||||  || ||| ||||||| | |||||  |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  45613812 gacagacaaccctaaaagttgcgtcaagtaaggtgaccaaacacgggaaagtgtgttctgacaatcaacatgtttttataccatttgattttgacacttt 45613911  T
Q  210 tggtttcc 217  Q
     |||||||    
T  45613912 cggtttcc 45613919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 32584768 - 32584630
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    ||||||||||||| |||| |||||||||||| ||  || |||||||| |||||||||||||||||| ||||||||||||| | |||||||||| |||| |    
T  32584768 tgggattaggggtcggggattttacggtaggacatgcaaccctaaaaattgcatcaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaaga 32584669  T
Q  180 tgtttttataccatttgtttttgacacttttggtttcct 218  Q
    || ||||| |||||||| ||||||||||||  |||||||    
T  32584668 tgcttttacaccatttgcttttgacactttatgtttcct 32584630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 43857115 - 43856903
Alignment:
Q  7 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 105  Q
    |||||||||||||||||||  ||||||| ||| ||| ||  |||  || ||||||||  |  ||||||||||  ||||||||||||| |||||||||||     
T  43857115 tgcagatgttatggtgtacggatgggtaggagaaaaacatacatgcgtggacttgacgggggtttcaccacttgtgggattaggggtcggggcttttaca 43857016  T
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    ||||| |||||| |  |||||| ||| |||| ||||||||| | |||||||||||| |||| ||||| ||||||||  ||||||| ||||| ||||||||    
T  43857015 gtaggacagacaacattaaaagatgcgtcaatcaaagtggctagacatgagaaagcgtgttttgacaatcaacatgcgtttatacaatttgcttttgaca 43856916  T
Q  206 cttttggtttcct 218  Q
     ||||||||||||    
T  43856915 tttttggtttcct 43856903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 51 - 215
Target Start/End: Complemental strand, 983145 - 982981
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    |||||||||||| ||  ||| ||||||  |||||||||| || ||  ||||||  ||||| ||| ||||| |||||| ||| |||| |||||||||||||    
T  983145 tgtagacttgactagggtttaaccacttgtgggattaggtgtgggaccttttattgtaggacaggcagccataaaagctgcgtcaagcaaagtggccaaa 983046  T
Q  151 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 215  Q
    ||||||||| | |||||||||| |||||||| |||||||||||||| |||||| ||||| |||||    
T  983045 catgagaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatactttcggttt 982981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 5825508 - 5825311
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    ||||||||||||||| |||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| |||||||| | ||||||||||| ||    
T  5825508 gatgttatggtgtacgaatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcgaggcttttacggcag 5825409  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    | |||  ||||||||||| |||||||| |||||||  ||||||||| || || |||| ||||| ||||||||||||||||||||||  ||||||||||||    
T  5825408 gacaggaagccctaaaagctgcatcaagcaaagtg--caaacatgacaatgcgtgttatgacaatcaacatgtttttataccatttacttttgacacttt 5825311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 19277434 - 19277322
Alignment:
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    ||||| ||| ||| |||||||| ||| |||| |||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||    
T  19277434 gtaggacaggcagtcctaaaagctgcgtcaagcaaagtagccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgaca 19277335  T
Q  206 cttttggtttcct 218  Q
    |||| ||||||||    
T  19277334 ctttcggtttcct 19277322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 27521651 - 27521500
Alignment:
Q  67 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 166  Q
    ||||||||| |  |||||||||| || ||| ||||||||||||| ||  || || |||||||||| | ||||||||||| ||||||||||||| | ||||    
T  27521651 atttcaccatttgtgggattaggtgtcgggccttttacggtaggacatgcacccttaaaagttgcgttaaacaaagtggtcaaacatgagaaaacgtgtt 27521552  T
Q  167 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||| ||||||||  ||||||| ||||  |||||||||||||||||||||    
T  27521551 ctgacaatcaacatgcatttatacaatttacttttgacacttttggtttcct 27521500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 2904544 - 2904394
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  || | ||||||| || ||| |||||||||||  |||||| |||||||||| | |||| |||| | | |||||||||||||||||||||    
T  2904544 tttcaccacttgtgaggttaggggatgaggcatttacggtaggatagacagtcctaaaagttacgtcaagcaaaatagtcaaacatgagaaagcatgttc 2904445  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
     |||| |||||||| ||||||| ||||||||| |||||  ||||| |||||    
T  2904444 cgacaatcaacatgattttatatcatttgtttgtgacatgtttggcttcct 2904394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 3676836 - 3676675
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagac-agccctaaaagttgcatcaaacaaagtggccaa 149  Q
    ||||||||||||  |  ||||||||||  |||||||||| || ||  ||||||| ||||| ||| | ||||||||||| ||| |||| |||||||| |||    
T  3676836 tgtagacttgactggggtttcaccacttgtgggattaggtgtcggtccttttaccgtaggacaggccagccctaaaagctgcgtcaagcaaagtggtcaa 3676737  T
Q  150 acatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||| ||||||| |||||| ||  |||| ||| |||||||||||||| ||||||||||||||    
T  3676736 acatcagaaagcgtgttcttactatcaatatgcttttataccatttgcttttgacacttttg 3676675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 30216040 - 30216136
Alignment:
Q  122 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||| ||| |||| |||| ||| |||| |||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  30216040 taaaagctgcgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttataccatttgcttttgacactttcggtttcct 30216136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 22198150 - 22198015
Alignment:
Q  83 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 182  Q
    ||||||| || ||| |||||| |||||| |   ||||||||||||  || |||| ||||||| |||||||||||||||  |||||  ||| |||||||||    
T  22198150 gattaggtgtcgggccttttatggtaggacgcgcagccctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgt 22198051  T
Q  183 ttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||||||||||| ||||| |||||| ||||||||    
T  22198050 ttttataccatttgcttttgtcactttcggtttcct 22198015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 22239671 - 22239806
Alignment:
Q  83 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 182  Q
    ||||||| || ||| |||||| |||||| |   ||||||||||||  || |||| ||||||| |||||||||||||||  |||||  ||| |||||||||    
T  22239671 gattaggtgtcgggccttttatggtaggacgcgcagccctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgt 22239770  T
Q  183 ttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||||||||||| ||||| |||||| ||||||||    
T  22239771 ttttataccatttgcttttgtcactttcggtttcct 22239806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 24527756 - 24527618
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    |||||||||| || ||  ||||||| ||||| ||| ||||||||||||  |  ||||  |||||||  |||||||||||| | |||||||||| ||||||    
T  24527756 tgggattaggtgtcggaccttttaccgtaggacaggcagccctaaaagcagtgtcaagtaaagtgggaaaacatgagaaaacgtgttctgacaatcaaca 24527657  T
Q  180 tgtttttataccatttgtttttgacacttttggtttcct 218  Q
    || |||||||||||||| ||||||||||||  |||||||    
T  24527656 tgcttttataccatttgcttttgacactttcagtttcct 24527618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 42295177 - 42295262
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||| |||| ||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||| | ||||| ||||||||    
T  42295177 tcaagcaaaatggccaaacataagaaagcttcttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcct 42295262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 10905246 - 10905151
Alignment:
Q  118 gccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 214  Q
    |||||||||| ||| |||| ||||||||||||| ||||||||   |||||||||| ||||||||  ||||||||||||| |||||||||||||||||    
T  10905246 gccctaaaagctgcgtcaagcaaagtggccaaatatgagaaaaagtgttctgacactcaacatg-ctttataccatttgcttttgacacttttggtt 10905151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 40726478 - 40726549
Alignment:
Q  138 caaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    |||||||||||||||| | |||   |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40726478 caaagtggccaaacataataaaatgtgttctgacaatcaacatgtttttataccatttgtttttgacacttt 40726549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 9281066 - 9281201
Alignment:
Q  74 cactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacag 173  Q
    ||||| |||||||| | | | ||| |||||| ||||| |||||| ||||||||| |||||||| |||| | || |||||||||||||| |||||| |||     
T  9281066 cactcgtgggattatgtgatagggtttttacagtaggacagacaaccctaaaagctgcatcaagcaaactagc-aaacatgagaaagcgtgttctaacaa 9281164  T
Q  174 tcaacatgtttttataccatttgtttttgacactttt 210  Q
    |||||||| |||||||| |||||  ||||||| ||||    
T  9281165 tcaacatgcttttatactatttggatttgacattttt 9281201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 9292037 - 9292172
Alignment:
Q  74 cactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacag 173  Q
    ||||| |||||||| | | | ||| |||||| ||||| |||||| ||||||||| |||||||| |||| | || |||||||||||||| |||||| |||     
T  9292037 cactcgtgggattatgtgatagggtttttacagtaggacagacaaccctaaaagctgcatcaagcaaactagc-aaacatgagaaagcgtgttctaacaa 9292135  T
Q  174 tcaacatgtttttataccatttgtttttgacactttt 210  Q
    |||||||| |||||||| |||||  ||||||| ||||    
T  9292136 tcaacatgcttttatactatttggatttgacattttt 9292172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 33202405 - 33202493
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttct 168  Q
    ||||||||||||||||||||||||| |||||  ||| ||||||  ||||||| || ||| ||||||||||||||||||| || ||||||    
T  33202405 tgggattaggggttggggcttttacagtaggatagaaagccctggaagttgcgtccaactaagtggccaaacatgagaacgcgtgttct 33202493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 34067820 - 34067939
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    ||||||| || || |||||||||||  |||| || |||| | ||||| |||||||||||||||  |||| ||||| ||||||| ||| ||| ||||||||    
T  34067820 cttttactgtgggacagacagccctcgaagtcgcttcaagccaagtgaccaaacatgagaaagtgtgttttgacaatcaacat-tttctatgccatttgt 34067918  T
Q  198 ttttgacacttttggtttcct 218  Q
     ||||||||||||||||||||    
T  34067919 atttgacacttttggtttcct 34067939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 43856872 - 43856811
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 287  Q
    |||||||||||||||||||||||||||||| ||||| |||||  |||||||| |||||||||    
T  43856872 agttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacga 43856811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 25186876 - 25186999
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    |||||||||| || ||  ||||||| ||||| || | | ||||||||||||  ||||  ||||||| | ||||||||||||| ||||| || | ||||||    
T  25186876 tgggattaggtgtcggaccttttaccgtaggacataaaaccctaaaagttgtgtcaagtaaagtggtctaacatgagaaagcgtgttccgataatcaaca 25186975  T
Q  180 tgtttttataccatttgtttttga 203  Q
    ||||||| ||||||||| ||||||    
T  25186976 tgtttttctaccatttgcttttga 25186999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 34772946 - 34772819
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    |||||||| | ||||||  |||||||||| |  || |||| ||||||||||  |||| |||||| |||||| |||||||||  ||||| |||| | || |    
T  34772946 tgggattatgtgttgggctttttacggtatgataggcagctctaaaagttg--tcaatcaaagtagccaaatatgagaaagtgtgttcggacaattaata 34772849  T
Q  180 tgtttttataccatttgtttttgacacttt 209  Q
    ||||||||||||||||| |||||| |||||    
T  34772848 tgtttttataccatttgcttttgaaacttt 34772819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 1249735 - 1249667
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 166  Q
    |||||||||||||  ||||||||||||||  ||| ||||| ||||||| ||||||||||||||| ||||    
T  1249735 cttttacggtaggatagacagccctaaaacctgcgtcaaataaagtggtcaaacatgagaaagcgtgtt 1249667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 38839564 - 38839360
Alignment:
Q  10 agatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    ||||||||||||||||  ||| ||||||| |||||  ||| ||| ||||||||    |||||| || |  ||||||| ||||| | | ||||||||| ||    
T  38839564 agatgttatggtgtacggatgtgtaagagaaaacatgcatgtgtggacttgactgagatttcatcattg-tgggatttggggtcgtgtcttttacggaag 38839466  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaa----catgtttttataccatttgtttttgaca 205  Q
      |||||| | ||||||||||| | ||| ||| | | |||||||||||||||||||| || || ||||    ||||||||||||  ||||| ||||||||    
T  38839465 aacagacaactctaaaagttgcgtaaaataaaatcgtcaaacatgagaaagcatgttatgtcaatcaacatgcatgtttttatataatttgcttttgaca 38839366  T
Q  206 cttttg 211  Q
    ||||||    
T  38839365 cttttg 38839360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 30216165 - 30216228
Alignment:
Q  224 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 287  Q
    |||||||||| ||||||||| | |||||||||| |||| |||||| ||||||||||||| ||||    
T  30216165 aaagttcaaatggtcatgcatagcaatgtcatatctcctaggtctatgaatgttgtgttcacga 30216228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 27521469 - 27521403
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||| ||||||||| |||||||||||  |||| | |||| |||||||||||||||||| ||||    
T  27521469 agttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggatt 27521403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 43383283 - 43383211
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    ||||| ||||||||||| |||||||||||||||||   || |||||||| |||||| |||||| | |||||||    
T  43383283 tcaaataaagtggccaaccatgagaaagcatgttccagcaatcaacatgcttttatgccatttatgtttgaca 43383211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 48539261 - 48539213
Alignment:
Q  167 ctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 215  Q
    |||||| |||||||| |||||||||||||| |||||||||||| |||||    
T  48539261 ctgacaatcaacatgcttttataccatttgcttttgacactttcggttt 48539213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 45613951 - 45614017
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||| | ||||||| |||||||||| | |||| |||||  |||||||||||||||||| ||||    
T  45613951 agttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggatt 45614017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 1e-35; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 44198963 - 44198798
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    ||||||||||||  |  ||||||||||  |||||||||| || ||  ||||||| ||||| ||| |||| ||||||||||| |||| |||||||||||||    
T  44198963 tgtagacttgactggggtttcaccacttgtgggattaggtgtcggaccttttaccgtaggtcaggcagctctaaaagttgcgtcaagcaaagtggccaaa 44198864  T
Q  151 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 216  Q
    ||||||||||| |||||||| | |||||||| |||||||||||||| |||||||||||| ||||||    
T  44198863 catgagaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacactttcggtttc 44198798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 46940705 - 46940841
Alignment:
Q  75 actcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagt 174  Q
    |||| ||||||||||||| | || ||||| |||||| |||||| | ||||||| ||| |||| |||||||||||||||| ||||| ||||||| |||| |    
T  46940705 actcgtgggattaggggtcgaggattttatggtaggacagacaactctaaaagatgcgtcaagcaaagtggccaaacattagaaaacatgttccgacaat 46940804  T
Q  175 caacatgtttttataccatttgtttttgacacttttg 211  Q
    ||||||| |||||||||||||||||||||||||||||    
T  46940805 caacatgcttttataccatttgtttttgacacttttg 46940841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 7901094 - 7900887
Alignment:
Q  12 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 110  Q
    ||||||||||||| | ||| ||| ||||||| ||  ||| ||| ||||||||  |  ||||||||||  ||||||||||||||||| |||||||||||||    
T  7901094 atgttatggtgtatagatgtgtaggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggattaggggttgggtcttttacggtagg 7900995  T
Q  111 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 210  Q
     | || | ||||||||  ||| |||| |||| | ||| ||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||     
T  7900994 acggatatccctaaaaactgcgtcaagcaaaatagccgaacatgagaaagcgttttctgacaatcaacatgcttttataccatttgtttttgacactttc 7900895  T
Q  211 ggtttcct 218  Q
    || |||||    
T  7900894 ggcttcct 7900887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 39583169 - 39583307
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    |||||||| |||| ||| | |||| ||||||  || |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| ||||||    
T  39583169 tgggattaagggtcgggccatttatggtaggataggcagccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaaca 39583268  T
Q  180 tgtttttataccatttgtttttgacacttttggtttcct 218  Q
    || ||||||| |||||||||| |||||||| ||||||||    
T  39583269 tgcttttatatcatttgttttcgacactttcggtttcct 39583307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 53785952 - 53785738
Alignment:
Q  5 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 103  Q
    ||||| |||||| ||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  |||||||||| || ||| ||||||    
T  53785952 catgcggatgttttggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccactagtgggattaggtgtcgggcctttta 53785853  T
Q  104 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 203  Q
    | |||||  || ||||||| ||||  || ||||  || ||||||||||| |||||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  53785852 ccgtaggataggcagcccttaaagccgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttga 53785753  T
Q  204 cacttttggtttcct 218  Q
    |||||| ||||||||    
T  53785752 cactttcggtttcct 53785738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 49018206 - 49017992
Alignment:
Q  5 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 103  Q
    |||||||||||||||||||||  || |||| ||||||| ||  ||| |||| |||||||  |  ||||||||||  ||| |||||| || | | ||||||    
T  49018206 catgcagatgttatggtgtacggattggtacgaggaaaacatgcatgtgtaaacttgactggagtttcaccacttgtggaattaggtgtcgagcctttta 49018107  T
Q  104 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 203  Q
    ||||||| ||  || |||| |||||| | | |||||||||| |||||||||||||||  |||||| ||| |||||||||||||||||||||| ||||| |    
T  49018106 cggtaggacaagcaaccctgaaagttacgtaaaacaaagtgaccaaacatgagaaagtgtgttctaacaatcaacatgtttttataccatttttttttta 49018007  T
Q  204 cacttttggtttcct 218  Q
    |||||| ||||||||    
T  49018006 cactttcggtttcct 49017992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 37132971 - 37133075
Alignment:
Q  112 cagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||||||||||||||| | | |||| ||||||||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |    
T  37132971 cagacagccctaaaagctacgtcaagcaaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgttttttacactttcg 37133070  T
Q  212 gtttc 216  Q
    |||||    
T  37133071 gtttc 37133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 52741439 - 52741590
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaa-gttgcatcaaacaaagtggccaaacatgagaaagcatgtt 166  Q
    ||||||||||  |||||||||  || ||  ||||||  ||||| ||| ||||||||||| | ||  ||||||||| || |||||||||||||||| ||||    
T  52741439 tttcaccacttgtgggattagatgtaggaccttttattgtaggacaggcagccctaaaaagctgagtcaaacaaattgaccaaacatgagaaagcgtgtt 52741538  T
Q  167 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  52741539 ctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcct 52741590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 26772911 - 26772787
Alignment:
Q  94 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 193  Q
    ||||| ||||| ||||| ||  || ||||||||||||  |||| |||||||||||||||| ||||| | |||||||||| |||||||| |||||||||||    
T  26772911 ggggcatttacagtaggacatgcatccctaaaagttgtgtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccat 26772812  T
Q  194 ttgtttttgacacttttggtttcct 218  Q
    ||| ||||||||||||||| |||||    
T  26772811 ttgcttttgacacttttggcttcct 26772787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 4473224 - 4473090
Alignment:
Q  84 attaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtt 183  Q
    ||||| |||||||| |||||||||||| |||| |||| ||||| |||| |||| ||||||| | |||||||| ||||| |||||| ||  |||| |||||    
T  4473224 attagtggttggggtttttacggtaggacagagagccttaaaaattgcgtcaagcaaagtgtcaaaacatgaaaaagcgtgttctaaccatcaatatgtt 4473125  T
Q  184 tttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||| |||||||||||||||||| || |||||    
T  4473124 tttatactatttgtttttgacactttcggcttcct 4473090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 13582705 - 13582539
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    |||||||||||||    ||||| ||||  |||||||||| ||  || ||||||| ||||| ||  |||||||||||| ||| |||| |||||||  ||||    
T  13582705 tgtagacttgaccgaggtttcaacacttgtgggattaggtgtcaggccttttaccgtaggacaagcagccctaaaagctgcgtcaatcaaagtgatcaaa 13582606  T
Q  151 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||| ||||||  |||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||    
T  13582605 cataagaaagtgtgttctgacaatcaacgtgtttttataccatttgttttt-acacttttgatttcct 13582539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 37992511 - 37992384
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||| |||||||| |||||| ||| | |  |||||||||||| || | ||||||  ||||||  |||||||||||| ||||||||||| ||||||||||    
T  37992511 tttcatcactcatgagattagaggtcgagatttttacggtaggacatatagccctgcaagttgtgtcaaacaaagtgaccaaacatgaggaagcatgttc 37992412  T
Q  168 tgacagtcaacatgtttttataccattt 195  Q
    ||||| |||||||| ||||||| |||||    
T  37992411 tgacaatcaacatgattttatatcattt 37992384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 5338796 - 5338672
Alignment:
Q  97 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt---ctgacagtcaacatgtttttataccat 193  Q
    |||||||||||||| |||| |||||||| |||||| ||||||||| | ||||||||||||||||   |||    |||||||||||||| |||||||| ||    
T  5338796 gcttttacggtaggacagaaagccctaagagttgcgtcaaacaaaattgccaaacatgagaaagtgcgttgcgttgacagtcaacatgcttttatacaat 5338697  T
Q  194 ttgtttttgacacttttggtttcct 218  Q
    ||| |||||||||||| || |||||    
T  5338696 ttgcttttgacactttcggcttcct 5338672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 38670887 - 38670952
Alignment:
Q  147 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 212  Q
    ||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  38670887 caaacatgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttgg 38670952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 38146223 - 38146092
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    ||||||||||||| || ||||| | |||||| ||  ||||||||||||  ||||||| |||||||| |||||  |||| | | |||| ||||| ||||||    
T  38146223 tgggattaggggtcggagctttgagggtaggacatgcagccctaaaagcggcatcaatcaaagtggtcaaacgcgagacaacgtgttttgacaatcaaca 38146124  T
Q  180 tgtttttataccatttgtttttgacacttttg 211  Q
    ||||||||||||||||   |||||||||||||    
T  38146123 tgtttttataccatttacatttgacacttttg 38146092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 32546901 - 32546824
Alignment:
Q  141 agtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||||||||||||| ||||| |||| |||||||  |||||||||||||| ||||||||||||  |||||||    
T  32546901 agtggccaaacatgagaaagcgtgttcggacaatcaacatacttttataccatttgcttttgacactttcagtttcct 32546824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 3443270 - 3443390
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    |||||||| |||| |||| || |||||||||||| |||| |||| ||||||||||||| ||||  | |||| ||| |||||||| |||||||||||||      
T  3443270 cttttacgataggacagagagtcctaaaagttgcgtcaagcaaaatggccaaacatgaaaaagtgtattctaacaatcaacatgcttttataccattttc 3443369  T
Q  198 ttttgacacttttggtttcct 218  Q
    | ||||||||||  |||||||    
T  3443370 tgttgacactttcagtttcct 3443390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 38978757 - 38978877
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    |||||||||||||  | ||| ||||||||||||  |||| |||| |||  | ||||| |||| | | || ||||| |||| |||||||||||| ||||||    
T  38978757 cttttacggtaggaaatacaaccctaaaagttgtgtcaagcaaattggttagacatgtgaaaacgtattttgacaatcaatatgtttttatactatttgt 38978856  T
Q  198 ttttgacacttttggtttcct 218  Q
    |||||||||||||||||||||    
T  38978857 ttttgacacttttggtttcct 38978877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 7502010 - 7502090
Alignment:
Q  139 aaagtggccaaacatgagaaagcatgttctgacagtcaacatg-tttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||| ||||||||||||||| |||||  ||| |||||||| ||||||||||||||  |||||||| ||||||||||||    
T  7502010 aaagtggtcaaacatgagaaagcgtgttcgaacaatcaacatgttttttataccattttcttttgacatttttggtttcct 7502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 54508367 - 54508455
Alignment:
Q  124 aaagttgcatcaaacaaagtggccaaacatgagaaag-catgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||||||| ||||||||| |||| ||||||||||||  | |||||||||| | |||||||||||||| |||||| |||||||| |||||    
T  54508367 aaagttgcgtcaaacaaaatggctaaacatgagaaaaacttgttctgacaattaacatgtttttatatcatttgcttttgacatttttg 54508455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 51234716 - 51234654
Alignment:
Q  147 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||||||||| |||||||||| |||||  ||||||| ||||||||||||| |||||||||||||    
T  51234716 caaacatgaaaaagcatgttatgacaaccaacatgcttttataccatttatttttgacacttt 51234654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 43123268 - 43123197
Alignment:
Q  124 aaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 195  Q
    ||||| ||||||| ||||||| | |||||||| |||| ||||||||||| |||||||||| |||||| ||||    
T  43123268 aaagtcgcatcaagcaaagtgtctaaacatgataaaggatgttctgacaatcaacatgttgttatactattt 43123197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 13582508 - 13582442
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||| ||||||||| |||||||||||  |||| ||| |  |||||||||||||||||||||||    
T  13582508 agttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagatt 13582442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 38146054 - 38145988
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||||||||||||| |||||||||||  |||| |||||  |||| ||||||||||||| ||||    
T  38146054 agttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgatt 38145988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 52411903 - 52411960
Alignment:
Q  152 atgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    |||||| ||| |||||||||| |||||||| |||||| ||||||| ||||||||||||    
T  52411903 atgagagagcgtgttctgacaatcaacatgcttttattccatttgcttttgacacttt 52411960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 7502109 - 7502153
Alignment:
Q  216 ccttctacaaagttcaaagggtcatgcacaacaatgtcataactc 260  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  7502109 ccttctacagagtttaaagggtcatgcacaacaatgtcatgactc 7502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 46320025 - 46320093
Alignment:
Q  225 aagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagattt 293  Q
    |||||||||||||||  |||||| ||||||| ||| | |||||  ||||||| ||||||||||||||||    
T  46320025 aagttcaaagggtcacacacaacgatgtcatgacttctaggtccatgaatgtcgtgtttacgaagattt 46320093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 46940882 - 46940944
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaa 288  Q
    |||||||||| |||||||| |||||||||| ||||  ||||   |||||||||||||||||||    
T  46940882 agttcaaaggatcatgcacgacaatgtcatgactcataggttcatgaatgttgtgtttacgaa 46940944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 76; Significance: 2e-34; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 6529 - 6363
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    ||||||||||||  |  ||||||||||  ||||||||||| | ||  ||||||| ||||| |||||||||||||||||||| ||||  ||||||||||||    
T  6529 tgtagacttgactggggtttcaccacttgtgggattaggg-tcggaccttttaccgtaggacagacagccctaaaagttgcgtcaagtaaagtggccaaa 6431  T
Q  151 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||| |||||||||| |||||||| || ||||||||||| ||||||||||||  |||||||    
T  6430 catgagaaagcgtgttctgacaatcaacatgcttctataccatttgcttttgacactttcagtttcct 6363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 75; Significance: 6e-34; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 33428 - 33279
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    |||||||||| ||||||||||| || ||| ||||||||||||| ||| || || |||| || ||||||| ||||||||| |||||||||||||| |||||    
T  33428 tttcaccacttatgggattaggtgtcgggccttttacggtaggacaggcaaccttaaa-gtggcatcaagcaaagtggctaaacatgagaaagcgtgttc 33330  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||| ||||||||||||||||||||||  |||||||| ||| ||||||||    
T  33329 tgacaatcaacatgtttttataccatttacttttgacattttcggtttcct 33279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 1e-32; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 23484802 - 23485006
Alignment:
Q  5 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 103  Q
    |||||| |||||||| |||||  ||||||| ||||||| ||  ||| |||||||||||   |  ||||||||||  |||||||| | || ||| |||| |    
T  23484802 catgcatatgttatgatgtacggatgggtaggaggaaaacatgcatgtgtagacttgattggggtttcaccacttgtgggattaagtgtcgggcctttaa 23484901  T
Q  104 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 203  Q
    |||| || ||   ||||||||||| | | |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  23484902 cggtgggacaactagccctaaaagctacgtcaaacaaagtggccaaatatgagaaagcatgttctgacaatcaacatgcttttataccatttgtttttga 23485001  T
Q  204 cactt 208  Q
    |||||    
T  23485002 cactt 23485006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 41867778 - 41867986
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    |||||||||||||||| ||||||| | ||||| ||  | | ||||||||||||    ||||||| |||  |||||||||| || ||  ||||||  ||||    
T  41867778 gatgttatggtgtacagatgggtaggtggaaaacatgcttgtgtagacttgactgagatttcacgacttgtgggattaggtgtcggaccttttatcgtag 41867877  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    | ||| ||||| |||||| ||| |||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  41867878 gacaggcagccttaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttataccatttgcttttgacacttt 41867977  T
Q  210 tggtttcct 218  Q
     || |||||    
T  41867978 cgggttcct 41867986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 2888753 - 2888545
Alignment:
Q  7 tgcagatgttatggtgtacaaatgggtaagagg-aaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 105  Q
    ||||||||||||||| |||| |||||||||||| |||||  ||| ||| ||||| ||  | ||||| ||||| || ||||||||||| ||     ||| |    
T  2888753 tgcagatgttatggtatacatatgggtaagaggtaaacatgcatgtgtggacttaactggaatttcgccacttataggattaggggtcgga----ttatg 2888658  T
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    |||| ||| ||| ||||||||||||| || | |||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||| |||| |||||    
T  2888657 gtagtgcaaacaaccctaaaagttgcgtctagcaaagtggacaaacatgagaaaacgtgttctgacaatcaacatgtttttataccattcgtttatgaca 2888558  T
Q  206 cttttggtttcct 218  Q
    ||||||| |||||    
T  2888557 cttttggcttcct 2888545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 5532598 - 5532457
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||  |||||||||||| ||| |||| |||||||| ||||||||||||| | ||||     
T  5532598 tttcaccactcataggattaggggtcggggattttacggtaggacatgcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttg 5532499  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    ||||| |||||||| |||||||| ||||  ||||||||||||    
T  5532498 tgacaatcaacatgcttttatactatttacttttgacacttt 5532457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 4413024 - 4413144
Alignment:
Q  98 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 197  Q
    ||||||| ||||| ||| || ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||     
T  4413024 cttttaccgtaggacaggcaaccctaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgc 4413123  T
Q  198 ttttgacacttttggtttcct 218  Q
    |||||||||||| ||||||||    
T  4413124 ttttgacactttcggtttcct 4413144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 9685326 - 9685486
Alignment:
Q  51 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 150  Q
    ||||||||||||  |  ||||||||||  |||||||||| ||  |  ||||||| |||||  || |||||||||||   || |||| |||||||||||||    
T  9685326 tgtagacttgactggggtttcaccacttgtgggattaggtgtcagaccttttaccgtaggataggcagccctaaaatccgcgtcaagcaaagtggccaaa 9685425  T
Q  151 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    ||||| ||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  9685426 catgaaaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 9685486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 19161647 - 19161858
Alignment:
Q  5 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 103  Q
    ||||| ||||||||| ||||   ||||||| ||||||| ||  ||| |||||||||||  ||  ||||||||||  || ||||||  ||  || ||||||    
T  19161647 catgcggatgttatgatgtaaggatgggtaggaggaaaacatgcatgtgtagacttgaatagggtttcaccacttgtgagattagatgtcaggcctttta 19161746  T
Q  104 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 203  Q
     |||||| || ||| ||||||||  ||| ||||  ||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  19161747 tggtaggacatacatccctaaaatctgcgtcaagaaaagtgggcaaacatgaaaaagcgtgttctgacaatcaacatgtttttataccatttgcttttga 19161846  T
Q  204 cacttttggttt 215  Q
    |||||| |||||    
T  19161847 cactttcggttt 19161858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 28225167 - 28225029
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    |||| ||||| ||| |||||||||||||||| || ||| |  |||||| ||| |||| ||||||| ||||| |||||||||| | |||||||| ||||||    
T  28225167 tgggcttaggagttagggcttttacggtaggacaaacaactttaaaagctgcgtcaagcaaagtgaccaaatatgagaaagcgtattctgacaatcaaca 28225068  T
Q  180 tgtttttataccatttgtttttgacacttttggtttcct 218  Q
    || |||||||||||||| |||||||||||| || |||||    
T  28225067 tgcttttataccatttgcttttgacactttcggcttcct 28225029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 44686598 - 44686490
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| |||||||| |||||||||||| |||| ||||||| |||||||| ||  |||| ||| |||||||||||||||||||| |||||    
T  44686598 tttcaccacttgtgggtttaggggtcggggcttttacgataggacagacagtcctaaaagctg-gtcaagcaatgtggccaaacatgagaaagcgtgttc 44686500  T
Q  168 tgacagtcaa 177  Q
    ||||| ||||    
T  44686499 tgacaatcaa 44686490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 17344881 - 17344667
Alignment:
Q  5 catgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggctttta 103  Q
    ||||| |||||||||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  |||||| |||  |||||||||| ||  |  ||||||    
T  17344881 catgcggatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcacaacttgtgggattaggtgtcagacctttta 17344782  T
Q  104 cggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 203  Q
    | |||||  || ||| ||| |||| ||| ||||  || ||||||||||| |||||| | |||| | ||| |||||||| |||||||||||||| ||||||    
T  17344781 ccgtaggaaagccagtccttaaagctgcgtcaagtaaggtggccaaacacgagaaaacgtgttttcacaatcaacatgcttttataccatttgcttttga 17344682  T
Q  204 cacttttggtttcct 218  Q
    ||||||  |||||||    
T  17344681 cactttcagtttcct 17344667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 1296031 - 1296111
Alignment:
Q  121 ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 201  Q
    ||||||| ||| ||||||||| |||||||||||||||||  ||||||||||| | |||||||||||||||| ||| |||||    
T  1296031 ctaaaagctgcgtcaaacaaaatggccaaacatgagaaaatatgttctgacaataaacatgtttttatacctttttttttt 1296111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 13147096 - 13147175
Alignment:
Q  139 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgt---ttttataccatttgtttttgacacttttggttt 215  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||| |   |||||||||||||| ||||||||||||||||||    
T  13147096 aaagtggtcaaacatgagaaagcgtgttctgacaatcagcatatactttttataccatttgattttgacacttttggttt 13147175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 27502540 - 27502400
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  |||| ||||||||  | ||||||||| |||| || | | ||||||||| ||| |||| |||||||| ||||||||||||| | |||||    
T  27502540 tttcaccacttgtgggtttaggggtcagagcttttacgataggaca-ataaccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttc 27502442  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
     ||||  ||||||| |||||||| |||  |||||||||||||    
T  27502441 cgacaaacaacatgcttttatacaattgctttttgacacttt 27502400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 34814812 - 34814893
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 214  Q
    ||||| ||||||  ||||||||||||||| |||||||||| |||| ||| |||||||||||||| ||| |||||||| ||||    
T  34814812 tcaaataaagtgatcaaacatgagaaagcgtgttctgacaatcaatatgcttttataccatttgctttcgacactttcggtt 34814893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 18744956 - 18745019
Alignment:
Q  142 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 205  Q
    ||||||||||| |||||||| |||||||||| |||||||  |||||||||||||| ||||||||    
T  18744956 gtggccaaacacgagaaagcgtgttctgacaatcaacatacttttataccatttgcttttgaca 18745019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 3825894 - 3825764
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt-ctgacagtcaac 178  Q
    |||||||||||||  || ||||||||||| | |||| ||||||||||| ||| |||| |||||||| ||||||||| ||||  | || |||||| || ||    
T  3825894 tgggattaggggtcaggacttttacggtatgacagagagccctaaaagctgcgtcaagcaaagtggtcaaacatgaaaaagttttttcctgacaatctac 3825795  T
Q  179 atgtttttataccatttgtttttgacacttt 209  Q
    ||||||||||  |||||| ||  ||||||||    
T  3825794 atgtttttatttcatttgcttcagacacttt 3825764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 33612555 - 33612625
Alignment:
Q  148 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||||||||| | |||| ||||| |||||||| |||||||| |||||| |||||||||||||| |||||    
T  33612555 aaacatgagaaaacgtgttttgacaatcaacatgattttatacaatttgtatttgacacttttggcttcct 33612625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 2886638 - 2886692
Alignment:
Q  163 tgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 217  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||| |||||||    
T  2886638 tgttctgacaatcaacatgtttttatatcatttgtttttgatattttcggtttcc 2886692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 5679392 - 5679314
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 211  Q
    |||| |||||||||||||||||||||| ||||||  || | |||||||  ||| ||||||||| | |||||||||||||    
T  5679392 tcaagcaaagtggccaaacatgagaaaacatgttaagataatcaacatcctttcataccatttatgtttgacacttttg 5679314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 17344636 - 17344570
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||||| ||||    
T  17344636 agttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 17344570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 41868017 - 41868083
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 292  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||||| ||||    
T  41868017 agttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggatt 41868083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 20142753 - 20142800
Alignment:
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggttt 215  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  20142753 tgacaatcaacatgcttttataccattttcttttgacacttttggttt 20142800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 13413349 - 13413291
Alignment:
Q  226 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgttta 284  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||    
T  13413349 agttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta 13413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 9675023 - 9674946
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtgg 145  Q
    ||||||||||||||||||||||| |  |  |||||| |||||| || | ||||||||||  ||| |||||||||||||    
T  9675023 tttcaccactcatgggattagggatcagaccttttatggtaggacaaatagccctaaaatatgcgtcaaacaaagtgg 9674946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 44720427 - 44720374
Alignment:
Q  143 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 196  Q
    ||||||||||||| ||| | |||| ||||| |||||||||||||||||| ||||    
T  44720427 tggccaaacatgaaaaaacgtgttatgacaatcaacatgtttttataccgtttg 44720374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 67; Significance: 4e-29; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 18292 - 18441
Alignment:
Q  67 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 166  Q
    ||||||| |||| |||||||| |||| || ||||||| | |||| || ||| |||||||||||||||||||||||| |||||||||||||||| | ||||    
T  18292 atttcactactcgtgggattacgggtcggagcttttatgataggacaaacaaccctaaaagttgcatcaaacaaagcggccaaacatgagaaa-cgtgtt 18390  T
Q  167 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 217  Q
    || ||| |||||||||||||||  ||| || |||||||||||||| |||||    
T  18391 ctcacaatcaacatgtttttatgtcatctgcttttgacacttttgatttcc 18441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 10543 - 10389
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||| ||||||||||||||||||||||||| || || ||  |||||||||||||||| ||||  ||| ||||||||||||| || || |||||    
T  10543 tttcaccactcgtgggattaggggttggggcttttacagttggacaagcagccctaaaagttgcgtcaagtaaaatggccaaacatgataatgcgtgttc 10444  T
Q  168 tga----cagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||    || |||||||| |||||||||||||| ||||||||||| ||| |||||    
T  10443 tgacaatcaatcaacatgcttttataccatttgcttttgacacttgtggcttcct 10389  T

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Target: scaffold1768 (Bit Score: 62; Significance: 4e-26; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 54 - 259
Alignment:
Q  11 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 109  Q
    ||||||||| |||||  ||||||| ||||||| ||  ||| | ||||||||||  |  ||||||||||  |||||||| | || ||| ||||||| ||||    
T  54 gatgttatgatgtacggatgggtaggaggaaaacatgcatgtatagacttgactggggtttcaccacttgtgggattaagtgtcgggccttttactgtag 153  T
Q  110 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    | ||| |||||||||||  ||| |||| |||||||||||||||||||| ||   ||| ||||  |||||||| ||||||||||||||| |||||||||||    
T  154 gacaggcagccctaaaaactgcgtcaagcaaagtggccaaacatgagacagtgggttatgaccatcaacatgcttttataccatttgtgtttgacacttt 253  T
Q  210 tggttt 215  Q
    ||||||    
T  254 tggttt 259  T

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Target: scaffold0110 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 47467 - 47617
Alignment:
Q  68 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 167  Q
    ||||||||||  ||||||||||| ||| | ||||||||||||| || | |  |||||||||||| ||||  ||| |||||||||||||||||   |||||    
T  47467 tttcaccacttgtgggattagggattgagacttttacggtaggacaaataaacctaaaagttgcgtcaagtaaaatggccaaacatgagaaaatgtgttc 47566  T
Q  168 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||| ||||| ||||||||||||||| |||| ||||||| | ||||||    
T  47567 tgacagttaacatatttttataccatttgcttttaacactttcgatttcct 47617  T

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Target: scaffold0031 (Bit Score: 58; Significance: 9e-24; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 49542 - 49449
Alignment:
Q  116 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 209  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| | |||||||||| ||||| || |||||||||||||| ||||||||||||    
T  49542 cagccctaaaagttgcatcaaacaaagtggtcaaatgtgagaaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacacttt 49449  T

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Target: scaffold0009 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 103272 - 103135
Alignment:
Q  80 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 179  Q
    |||||| ||| || ||| ||||||| ||||| ||| ||||||| |||| ||| ||||  ||  |||||||||| |||||||| ||| |||||| ||||||    
T  103272 tgggataaggtgtcgggccttttaccgtaggacaggcagccctcaaagctgcgtcaagtaagatggccaaacacgagaaagcgtgt-ctgacaatcaaca 103174  T
Q  180 tgtttttataccatttgtttttgacacttttggtttcct 218  Q
    || |||||||||||||| |||||||||||| ||||||||    
T  103173 tgcttttataccatttgcttttgacactttcggtttcct 103135  T

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Target: scaffold0493 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 8525 - 8594
Alignment:
Q  149 aacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||    
T  8525 aacatgagaaaacatgttctgacaatcaacatgtttttataccatttgcgtttaacacttttggtttcct 8594  T

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Target: scaffold0119 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 16275 - 16191
Alignment:
Q  106 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 190  Q
    ||||| |||||| | ||||||| ||| ||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||||    
T  16275 gtaggacagacaacgctaaaagctgcgtcaaacaaaatggccaaacatgagaaaacatgttctgacaataaacatgtttttatac 16191  T

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Target: scaffold0470 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 7727 - 7631
Alignment:
Q  122 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 218  Q
    |||||||||| ||||| | ||| |  |||||||||||||| |||||| ||| |||||||| ||||| |||||||| ||||||||||||  |||||||    
T  7727 taaaagttgcgtcaaatagagtagttaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcct 7631  T

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Target: scaffold0085 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 37444 - 37391
Alignment:
Q  133 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgttttt 186  Q
    ||||||||| ||  ||||||||||||||||| |||||||| |||||||||||||    
T  37444 tcaaacaaaatgatcaaacatgagaaagcatattctgacaatcaacatgttttt 37391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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