View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11718_low_11 (Length: 563)

Name: NF11718_low_11
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11718_low_11
NF11718_low_11
[»] chr1 (8 HSPs)
chr1 (166-521)||(34478988-34479344)
chr1 (1-50)||(34479462-34479511)
chr1 (1-48)||(50377301-50377348)
chr1 (1-48)||(10776533-10776580)
chr1 (1-48)||(21686846-21686893)
chr1 (188-274)||(34483910-34483996)
chr1 (202-274)||(34491896-34491968)
chr1 (4-48)||(47132873-47132917)
[»] chr7 (4 HSPs)
chr7 (202-276)||(3333087-3333161)
chr7 (204-273)||(3313984-3314053)
chr7 (1-48)||(39328862-39328909)
chr7 (1-36)||(45349871-45349906)
[»] chr4 (4 HSPs)
chr4 (215-273)||(9596180-9596238)
chr4 (1-45)||(37030254-37030298)
chr4 (1-48)||(19853584-19853631)
chr4 (4-46)||(52944300-52944342)
[»] scaffold0445 (1 HSPs)
scaffold0445 (1-48)||(1314-1361)
[»] chr6 (3 HSPs)
chr6 (1-48)||(13546735-13546782)
chr6 (1-48)||(23128589-23128636)
chr6 (17-48)||(28981145-28981176)
[»] chr3 (2 HSPs)
chr3 (1-48)||(45568517-45568564)
chr3 (4-48)||(3606742-3606786)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-48)||(58164-58198)
[»] scaffold0603 (1 HSPs)
scaffold0603 (1-45)||(7689-7733)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 166 - 521
Target Start/End: Complemental strand, 34479344 - 34478988
Alignment:
Q  166 cgtccctcctcgatgaactggacatgtacaattctcactaatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34479344 cgtccctcctcgatgaactggacatgtacaattctcactaatttctagtttttcatccaaatggggaactcatccaaaactgaagtttaaattgcatgat 34479245  T
Q  266 aaatgagatggcnnnnnnnaa-cggatacctatattagtttatgtttgtaggcaagaaaaaattatttatatttttataaataaaaatatgaaggataaa 364  Q
    ||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34479244 aaatgagatggctttgtttaaacggatacctatattagtttatgtttgtaggcaagaaaaaattatttatatttttataaataaaaatatgaaggataaa 34479145  T
Q  365 tcaaatgcatgtaaggtgaaggcttgtggacttaagtgtataaataaagagtgacaagacatacataacaaacaacttgtcaacaacacagattctacaa 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34479144 tcaaatgcatgtaaggtgaaggcttgtggacttaagtgtataaataaagagtaacaagacatacataacaaacaacttgtcaacaacacagattctacaa 34479045  T
Q  465 attcatacacgtgtgtcgaatgaagccaaacctgcatagaaatgaagtctctacgag 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34479044 attcatacacgtgtgtcgaatgaagccaaacctgcatagaaatgaagtctctacgag 34478988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34479511 - 34479462
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacgagg 50  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  34479511 tcaaacgccacataagacgacgaacaatacaacgccatactcagacgagg 34479462  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50377348 - 50377301
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  50377348 tcaaatgccacaaaaaacgacgaacaacacaacgccgtacttagacga 50377301  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10776533 - 10776580
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| ||||| ||||||||||||||||||||| ||| ||||||    
T  10776533 tcaaacgccgcataagacgacgaacaacacaacgccgcacttagacga 10776580  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21686893 - 21686846
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| || || ||||||||||||||||||||||||| ||||||    
T  21686893 tcaaacgccgcacaagacgacgaacaacacaacgccgtacttagacga 21686846  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 34483996 - 34483910
Alignment:
Q  188 catgtacaattctcactaatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgagat 274  Q
    |||||||||||  ||||||||| |||||||||| | ||| | ||||||||||   |||||||||  | |||| ||||||||||||||    
T  34483996 catgtacaatttacactaatttatagtttttcacctaaacgcggaactcatcttgaaatgaagtcgagattgaatgataaatgagat 34483910  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 34491968 - 34491896
Alignment:
Q  202 actaatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgagat 274  Q
    |||||||| || ||||||| | ||||| | ||||||||||||||| ||||| |||||  |||| |||||||||    
T  34491968 actaatttttaatttttcacctaaatgagaaactcatccaaaaataaagttgaaattatatgaaaaatgagat 34491896  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 47132917 - 47132873
Alignment:
Q  4 aacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||| || |||||||||||||||||||||||  ||||||||||    
T  47132917 aacgccgcacaaaacgacgaacaacacaacgccccactcagacga 47132873  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 3333161 - 3333087
Alignment:
Q  202 actaatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgagatgg 276  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  3333161 actaatttttagtttttcactcaaatgaggaactcatccaaaaataaagttgaaattgcatgaaaaatgagatgg 3333087  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 3314053 - 3313984
Alignment:
Q  204 taatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgaga 273  Q
    |||||| |||||||||| |  |||| ||||||| ||||||||||||||| ||||||||| | ||||||||    
T  3314053 taatttttagtttttcacctgaatgaggaactcgtccaaaaatgaagttgaaattgcataaaaaatgaga 3313984  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39328862 - 39328909
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| || || ||||||||||||||||||||||||| ||||||    
T  39328862 tcaaacgccgcacaagacgacgaacaacacaacgccgtacttagacga 39328909  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45349871 - 45349906
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgcc 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  45349871 tcaaacgccacacaaaacgacgaacaacacaacgcc 45349906  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 9596238 - 9596180
Alignment:
Q  215 ttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgaga 273  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||    
T  9596238 ttttcatccaaaagaggaactcatccaaaaatgaagttgaaattgcatgaaaaatgaga 9596180  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37030298 - 37030254
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcaga 45  Q
    |||||||||| | || |||||||||||||||||||||||||||||    
T  37030298 tcaaacgccatacaagacgacgaacaacacaacgccgtactcaga 37030254  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19853584 - 19853631
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| ||||||    
T  19853584 tcaaatgccacataagacgacgaacaacacaacgccgcacttagacga 19853631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 52944342 - 52944300
Alignment:
Q  4 aacgccacataaaacgacgaacaacacaacgccgtactcagac 46  Q
    |||||| || |||||||||||||||||||||||| ||||||||    
T  52944342 aacgccgcacaaaacgacgaacaacacaacgccgcactcagac 52944300  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1361 - 1314
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||||||||| || ||||||||||||||||||||| ||| ||||||    
T  1361 tcaaacgccacacaagacgacgaacaacacaacgccgcacttagacga 1314  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13546735 - 13546782
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||| ||||    
T  13546735 tcaaacgccgcataagacgacgaacaacacaacgccgcactcaaacga 13546782  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23128636 - 23128589
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||||||||| || ||||||||||||||||||||| ||| ||||||    
T  23128636 tcaaacgccacacaagacgacgaacaacacaacgccgcacttagacga 23128589  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 28981176 - 28981145
Alignment:
Q  17 acgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||||||||||||||||||||||||||    
T  28981176 acgacgaacaacacaacgccgtactcagacga 28981145  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45568517 - 45568564
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||||||||| || ||||||||||||||||||||| ||| ||||||    
T  45568517 tcaaacgccacacaagacgacgaacaacacaacgccgcacttagacga 45568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 3606786 - 3606742
Alignment:
Q  4 aacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| || |||||||||||||||| |||| ||||||||||    
T  3606786 aacgccacacaagacgacgaacaacacaatgccgcactcagacga 3606742  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 58164 - 58198
Alignment:
Q  14 aaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||||||||||||||||||||| ||||||||||    
T  58164 aaaacgacgaacaacacaacgccgcactcagacga 58198  T

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Target: scaffold0603 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7733 - 7689
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcaga 45  Q
    |||||||||||| || ||||| ||||||||||||||| |||||||    
T  7733 tcaaacgccacacaagacgacaaacaacacaacgccgcactcaga 7689  T

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