View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11718_low_12 (Length: 562)

Name: NF11718_low_12
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11718_low_12
NF11718_low_12
[»] chr4 (11 HSPs)
chr4 (20-554)||(2915764-2916305)
chr4 (378-527)||(40087892-40088038)
chr4 (102-315)||(7354266-7354476)
chr4 (378-489)||(44343846-44343957)
chr4 (377-526)||(21201232-21201381)
chr4 (377-490)||(27258408-27258521)
chr4 (102-182)||(12109591-12109671)
chr4 (52-182)||(40088240-40088370)
chr4 (52-182)||(7354523-7354653)
chr4 (25-71)||(44344271-44344317)
chr4 (394-463)||(35945593-35945662)
[»] chr1 (8 HSPs)
chr1 (376-515)||(39311974-39312112)
chr1 (22-179)||(6242982-6243139)
chr1 (378-489)||(16799192-16799303)
chr1 (412-531)||(25291771-25291890)
chr1 (225-323)||(31764174-31764272)
chr1 (36-180)||(47899924-47900068)
chr1 (216-354)||(26100439-26100577)
chr1 (25-71)||(52973453-52973499)
[»] chr2 (9 HSPs)
chr2 (408-549)||(42294938-42295079)
chr2 (409-530)||(26312726-26312847)
chr2 (394-531)||(34121666-34121803)
chr2 (225-323)||(34121855-34121953)
chr2 (164-250)||(38715349-38715435)
chr2 (427-531)||(18609166-18609270)
chr2 (23-71)||(42295311-42295359)
chr2 (408-491)||(38716103-38716186)
chr2 (22-67)||(25894666-25894711)
[»] chr6 (3 HSPs)
chr6 (378-527)||(25436909-25437058)
chr6 (376-527)||(25461900-25462052)
chr6 (407-531)||(29178889-29179013)
[»] chr7 (9 HSPs)
chr7 (27-182)||(26572334-26572489)
chr7 (378-527)||(6239822-6239973)
chr7 (407-525)||(41620266-41620384)
chr7 (383-463)||(32402398-32402480)
chr7 (33-117)||(2476217-2476301)
chr7 (25-72)||(8876795-8876842)
chr7 (27-117)||(984584-984674)
chr7 (482-531)||(32402485-32402534)
chr7 (450-549)||(14585574-14585674)
[»] chr8 (7 HSPs)
chr8 (411-531)||(27423209-27423329)
chr8 (23-279)||(19452087-19452343)
chr8 (23-279)||(19528733-19528989)
chr8 (373-527)||(8120579-8120732)
chr8 (155-300)||(18915436-18915581)
chr8 (210-264)||(7635692-7635746)
chr8 (432-525)||(11436077-11436170)
[»] chr5 (4 HSPs)
chr5 (113-202)||(624671-624760)
chr5 (205-459)||(624378-624631)
chr5 (125-181)||(17469317-17469373)
chr5 (208-266)||(18787522-18787580)


Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 20 - 554
Target Start/End: Complemental strand, 2916305 - 2915764
Alignment:
Q  20 cattgagaccgacagggtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttgaa 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||    
T  2916305 cattgagaccgatagggtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagaggtgaagggaataagagagactactttgaa 2916206  T
Q  120 tgaaaactagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcataggctacaactcagcctctgccatcatgtagagctattgat 219  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916205 tgaaaactagatcttagaagagcttgaaagcagtgagatctagctaggactcttgtcataggctacaactcagcctctgccatcatgtagagctattgat 2916106  T
Q  220 gacttaacctaataatgttgcatgt--taagtagtgtaagtgtaccccgagaggtgtatcttcacatgcttg------acataatggttgagtcgagaga 311  Q
    ||||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  2916105 gacttaatctaataatgttgcatgttataagtactgtaagtgtaccccgagaggtgtatcttcacatgcttgacatgtacataatggttgagtcgagaga 2916006  T
Q  312 ccccgaaggccatcagattgctaggaagttatgtgaagctataactatctacannnnnnnatctgaaagttgtacgaagttgtagctttcatctcagagt 411  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||    
T  2916005 ccccgaaggccatcaggttgctaggaagttatgtgaagctataactatctaca-ttttttatcagaaagttgtacgaagttgtagctttcatctcagagt 2915907  T
Q  412 tgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgttttattt 511  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2915906 tgtagctttctaactcttgaaaacttctatcttgaccaagttaattctttaacgacactttttcacttcaatctctaaatttcttttatatgttttattt 2915807  T
Q  512 acttctacattttactttagaaccttaacatattatctctgct 554  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2915806 acttctacattttactttagaaccttaacatattatctctgct 2915764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 378 - 527
Target Start/End: Complemental strand, 40088038 - 40087892
Alignment:
Q  378 aagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcac 477  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||| ||||| ||| ||||||||| |||||||   ||| ||||  |||||||||| |    
T  40088038 aagttgtacgaagctatagctttcatcttagagttgtagctttctaaatcttgcaaatctctatctttaccaagt---ttccttaaccacactttttcgc 40087942  T
Q  478 ttcaatctctaaatttcttttatatgttttatttacttctacattttact 527  Q
    || ||||||||| |   ||||| ||||||||||||||| | |||||||||    
T  40087941 ttgaatctctaattcctttttacatgttttatttacttatgcattttact 40087892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 102 - 315
Target Start/End: Complemental strand, 7354476 - 7354266
Alignment:
Q  102 aagagagattattttgaatgaaaactagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcataggctacaactcagcctctgcca 201  Q
    |||||||||| || |||  |||||||||||||| |||||| ||| ||||  | ||||||| ||| |||||||||||||||| | | ||||   | | | |    
T  7354476 aagagagattgttgtgatcgaaaactagatcttggaagagtttggaagcggtaagatctaactaagactcttgtcataggcaaaagctcaatatttacta 7354377  T
Q  202 tcatgtagagctattgatgacttaacctaataatgttgcatgttaagtagtgtaagtgtaccccgagaggtgtatcttcacatgcttgacataatggttg 301  Q
    |  ||| ||||| |||||||| |||||||  |||||||||||||||||| ||| | | ||||||||||||    ||||||||||||| |||| |||||||    
T  7354376 t--tgtggagctgttgatgacctaacctagaaatgttgcatgttaagtactgtgattataccccgagagg-acgtcttcacatgcttaacatgatggttg 7354280  T
Q  302 agtcgagagacccc 315  Q
    |||||| |||||||    
T  7354279 agtcgaaagacccc 7354266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 44343957 - 44343846
Alignment:
Q  378 aagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcac 477  Q
    |||||||| |||||| || ||| ||| ||| ||||||| |||||||| ||||| ||  ||||||||| ||||||||||||| ||||  ||||||||||||    
T  44343957 aagttgtatgaagttataacttccatttcaaagttgtacctttctaaatcttgcaagtctctatctttaccaagttaattccttaaccacactttttcac 44343858  T
Q  478 ttcaatctctaa 489  Q
    || |||||||||    
T  44343857 ttaaatctctaa 44343846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 526
Target Start/End: Complemental strand, 21201381 - 21201232
Alignment:
Q  377 aaagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttca 476  Q
    |||||||||||||| | |||||| ||||||||| | |||||||| ||| ||||| |||||| ||||||    |||||||||| ||||  |||||||||||    
T  21201381 aaagttgtacgaagctatagcttccatctcagaatcgtagctttataaatcttgcaaacctttatctttgtgaagttaattccttaaccacactttttca 21201282  T
Q  477 cttcaatctctaaatttcttttatatgttttatttacttctacattttac 526  Q
     || ||||||||||    ||||| ||| ||||||||||||  ||||||||    
T  21201281 tttgaatctctaaaacctttttacatgctttatttacttccgcattttac 21201232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 490
Target Start/End: Complemental strand, 27258521 - 27258408
Alignment:
Q  377 aaagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttca 476  Q
    |||||||||||||| | |||||| ||||||||| |||||| ||| ||| ||||| |||||| ||||||   ||||||||||| ||||  |||||||||||    
T  27258521 aaagttgtacgaagctatagcttccatctcagaattgtagttttttaaatcttgcaaacctttatctttgtcaagttaattccttaaccacactttttca 27258422  T
Q  477 cttcaatctctaaa 490  Q
     || ||||||||||    
T  27258421 tttgaatctctaaa 27258408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 12109671 - 12109591
Alignment:
Q  102 aagagagattattttgaatgaaaactagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcataggc 182  Q
    |||||||||| ||||| | ||  ||| |||||||||||||| |  ||||  ||||||||| ||||||||||||||||||||    
T  12109671 aagagagattgttttgcacgagtacttgatcttagaagagcctataagcgttgagatctaactaggactcttgtcataggc 12109591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 40088370 - 40088240
Alignment:
Q  52 tgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttgaatgaaaactagatcttagaagagc-ttgaaagc 150  Q
    ||||||||| ||||||||||  ||| |||| || || || ||||||||| ||| |||| || |||| ||||  |||||||||| || |||| ||  ||||    
T  40088370 tgtttgtttaatatgagttag-tctctatgcactaaaaggtgaagggaacaagggagactactttgcatgagtactagatcttggaggagccttttaagc 40088272  T
Q  151 actgagatctagctaggactcttgtcataggc 182  Q
      ||||||||| ||||||||||||||||||||    
T  40088271 gttgagatctaactaggactcttgtcataggc 40088240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 7354653 - 7354523
Alignment:
Q  52 tgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttgaatgaaaactagatcttagaagagcttgaaagca 151  Q
    ||||||||| ||||||||||| ||  || | | | |||| ||| | ||| |||||||||| |||||||  |||||||||| ||  ||||||||| |||      
T  7354653 tgtttgttttatatgagttacgtccctaagtatcgagagatgacgagaacaagagagattgttttgaacaaaaactagatattgaaagagcttggaagtg 7354554  T
Q  152 ctgagatctagctaggactcttgtcataggc 182  Q
     | |||||||  |||||||||||||||||||    
T  7354553 gtaagatctaattaggactcttgtcataggc 7354523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 44344317 - 44344271
Alignment:
Q  25 agaccgacagggtatgagaatgaaaagtgtttgtttgatatgagtta 71  Q
    ||||||| |||||||||||||| ||  ||||||||||||||||||||    
T  44344317 agaccgagagggtatgagaatggaacatgtttgtttgatatgagtta 44344271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 35945593 - 35945662
Alignment:
Q  394 tagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaa 463  Q
    |||||| ||| ||||| |||||||||||||| ||||| | |||||||| || ||||| ||||||| ||||    
T  35945593 tagcttccatatcagatttgtagctttctaaatcttgcagacctctatatttaccaatttaattccttaa 35945662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 376 - 515
Target Start/End: Complemental strand, 39312112 - 39311974
Alignment:
Q  376 gaaagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttc 475  Q
    ||||||||||||||||| || |||  ||| ||||||||||||||||||| ||||| ||||||||||||| | ||||||||||| ||||  ||||||||||    
T  39312112 gaaagttgtacgaagttatatcttcaatcacagagttgtagctttctaaatcttgcaaacctctatctttatcaagttaattccttaaccacactttttc 39312013  T
Q  476 acttcaatctctaaatttcttttatatgttttatttactt 515  Q
    |||| ||||||| ||||||||||||||| ||||| |||||    
T  39312012 acttgaatctct-aatttcttttatatgctttatctactt 39311974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 6242982 - 6243139
Alignment:
Q  22 ttgagaccgacagggtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttgaatg 121  Q
    |||||||||  ||| ||||| |||| ||| ||||||||||||||||||||| ||| || | | | |||| |||  ||||||||| ||| | | |||||      
T  6242982 ttgagaccggaaggatatgataatggaaaatgtttgtttgatatgagttacgtctctaagtatcgagaggtgacaggaataagatagactgtattgaaca 6243081  T
Q  122 aaaactagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcata 179  Q
    ||||||||||||| ||||||  |||||||||| ||||||| |||||||||||||||||    
T  6243082 aaaactagatcttggaagagtctgaaagcactaagatctaactaggactcttgtcata 6243139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 16799303 - 16799192
Alignment:
Q  378 aagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcac 477  Q
    |||||||| |||||| || ||| |||||||| ||||||||||||||| ||||| |||||||||| || ||||||||||||| || |  |||| |||||||    
T  16799303 aagttgtatgaagttataacttccatctcagcgttgtagctttctaaatcttgcaaacctctatttttaccaagttaattcctttaccacacgttttcac 16799204  T
Q  478 ttcaatctctaa 489  Q
    || |||||||||    
T  16799203 ttgaatctctaa 16799192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 412 - 531
Target Start/End: Original strand, 25291771 - 25291890
Alignment:
Q  412 tgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgttttattt 511  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||||  ||||   ||  ||||||||| |||||||||||   ||||| |||||||||||    
T  25291771 tgtagctttctaaatcttgcaaacctctatcttgatcaagttaattacttaactgcatcttttcacttgaatctctaaatcctttttacatgttttattt 25291870  T
Q  512 acttctacattttactttag 531  Q
    |||  | ||||||| |||||    
T  25291871 actcttgcattttaatttag 25291890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 31764174 - 31764272
Alignment:
Q  225 aacctaataatgttgcatgttaagtagtgtaagtgtaccccgagaggtgtatcttcacatgcttgacataatggttgagtcgagagaccccgaaggcca 323  Q
    |||||| ||||||||||||||||||| | | | |||||||||| |||||| ||||| ||||||| |||| ||||||| ||| ||||||||  |||||||    
T  31764174 aacctagtaatgttgcatgttaagtattttgattgtaccccgaaaggtgtgtcttcccatgcttaacatgatggttgtgtcaagagaccctaaaggcca 31764272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 47900068 - 47899924
Alignment:
Q  36 gtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttgaatgaaaactagatctta 135  Q
    ||||||||||| ||| | |||||| |||| ||||||  || ||||| ||  | || ||| ||||| |||||||| ||||||| ||||  | || |||||     
T  47900068 gtatgagaatggaaattttttgttagatacgagttatgtccttatgaactgaaaggtgatgggaacaagagagactattttgcatgagcattatatcttg 47899969  T
Q  136 gaagagcttgaaagcactgagatctagctaggactcttgtcatag 180  Q
    |||||| |||  ||| |||||||||| ||||||||||||||||||    
T  47899968 gaagaggttgggagctctgagatctaactaggactcttgtcatag 47899924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 354
Target Start/End: Original strand, 26100439 - 26100577
Alignment:
Q  216 tgatgacttaacctaataatgttgcatgttaagtagtgtaagtgtaccccgagaggtgtatcttcacatgcttgacataatggttgagtcgagagacccc 315  Q
    ||||||| |||| | ||||||||  || ||||||| ||| ||||||||||||  |||||||| || ||||||| || | ||||||| || || ||||||     
T  26100439 tgatgacctaacattataatgtttaatattaagtactgtgagtgtaccccgaacggtgtatcgtctcatgcttaacttgatggttgtgttgaaagaccca 26100538  T
Q  316 gaaggccatcagattgctaggaagttatgtgaagctata 354  Q
     |||||||   | |||| |||||||||| | ||||||||    
T  26100539 taaggccacttggttgccaggaagttatatcaagctata 26100577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 52973499 - 52973453
Alignment:
Q  25 agaccgacagggtatgagaatgaaaagtgtttgtttgatatgagtta 71  Q
    ||||||| |||||||||||||||||  ||||||||| ||||||||||    
T  52973499 agaccgatagggtatgagaatgaaacttgtttgtttaatatgagtta 52973453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 408 - 549
Target Start/End: Complemental strand, 42295079 - 42294938
Alignment:
Q  408 gagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgtttt 507  Q
    ||||||||||||| ||| ||||  ||| |||||| || ||||||||||||| ||||  | |||||||||| | ||||||||||||  ||| | ||| |||    
T  42295079 gagttgtagctttataaatcttacaaatctctatttttaccaagttaattccttaacaatactttttcacatgaatctctaaattcttttgacatgcttt 42294980  T
Q  508 atttacttctacattttactttagaaccttaacatattatct 549  Q
    |||||||||| ||||||||||||||||||||| || ||||||    
T  42294979 atttacttctgcattttactttagaaccttaaaatcttatct 42294938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 409 - 530
Target Start/End: Original strand, 26312726 - 26312847
Alignment:
Q  409 agttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgtttta 508  Q
    |||| ||||||||||| || || ||||||||||||| | ||||||||||||||||  |||  |||||| || ||||||||||| | ||||| ||||||||    
T  26312726 agttatagctttctaaatcgtgcaaacctctatctttagcaagttaattctttaaccacatcttttcaattgaatctctaaatcttttttacatgtttta 26312825  T
Q  509 tttacttctacattttacttta 530  Q
    ||||||| | ||||||||||||    
T  26312826 tttacttgtgcattttacttta 26312847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 531
Target Start/End: Complemental strand, 34121803 - 34121666
Alignment:
Q  394 tagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaattt 493  Q
    |||||| |||| || |||||||||| ||||| ||||  |||||||||| || ||||||||| ||||||||  |||||||| ||||| |||| ||||||||    
T  34121803 tagcttccatcacaaagttgtagctgtctaaatcttataaacctctatttttaccaagttagttctttaaccacactttt-cacttgaatcgctaaattt 34121705  T
Q  494 cttt-tatatgttttatttacttctacattttactttag 531  Q
     ||| || ||| ||||||||||| | |||||||||||||    
T  34121704 gtttctacatgctttatttacttttgcattttactttag 34121666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 34121953 - 34121855
Alignment:
Q  225 aacctaataatgttgcatgttaagtagtgtaagtgtaccccgagaggtgtatcttcacatgcttgacataatggttgagtcgagagaccccgaaggcca 323  Q
    |||||| ||||||||||||||||||| ||| | |||||| ||  | |||| ||||||||||||| || | ||||||| ||||| |||| || |||||||    
T  34121953 aacctattaatgttgcatgttaagtactgtgattgtacctcggaaagtgtgtcttcacatgcttaacctgatggttgtgtcgaaagactcctaaggcca 34121855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 38715349 - 38715435
Alignment:
Q  164 taggactcttgtcataggctacaactcagcctctgccatcatgtagagctattgatgacttaacctaataatgttgcatgttaagta 250  Q
    ||||| ||||||||||||| |   |||| |||||||||| || |||| |||   ||||| |||||||||||||||||||||||||||    
T  38715349 taggattcttgtcataggccatggctcaacctctgccataatttagatctacgaatgacctaacctaataatgttgcatgttaagta 38715435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 531
Target Start/End: Complemental strand, 18609270 - 18609166
Alignment:
Q  427 cttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgttttatttacttctacattttac 526  Q
    |||||||| |||||| || ||||||||||||| ||||  || | ||||| ||| |||||||| || | ||||| ||||||||||| ||| | ||| ||||    
T  18609270 cttgaaaagctctatttttaccaagttaattccttaaccactcattttcccttgaatctctacatcttttttacatgttttatttgcttttgcatcttac 18609171  T
Q  527 tttag 531  Q
    |||||    
T  18609170 tttag 18609166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 42295359 - 42295311
Alignment:
Q  23 tgagaccgacagggtatgagaatgaaaagtgtttgtttgatatgagtta 71  Q
    ||||||||| |||  ||||||||||||| ||||||||||||||||||||    
T  42295359 tgagaccgagaggacatgagaatgaaaaatgtttgtttgatatgagtta 42295311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 491
Target Start/End: Original strand, 38716103 - 38716186
Alignment:
Q  408 gagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaat 491  Q
    ||||||||||||| ||| ||||| |||||||||| || || |||||||||| ||||  | | |||||||||| || ||||||||    
T  38716103 gagttgtagctttataaatcttgtaaacctctatgtttactaagttaattcattaaccatattttttcacttgaacctctaaat 38716186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 25894711 - 25894666
Alignment:
Q  22 ttgagaccgacagggtatgagaatgaaaagtgtttgtttgatatga 67  Q
    ||||||||||||||||||| ||||| ||  ||||||||||||||||    
T  25894711 ttgagaccgacagggtatgggaatggaacatgtttgtttgatatga 25894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 378 - 527
Target Start/End: Complemental strand, 25437058 - 25436909
Alignment:
Q  378 aagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcac 477  Q
    |||||||| |||| | |||||| ||||| ||||||||| |||||||| |||||  || ||||||||| ||||||||||||| | ||  ||||||||||||    
T  25437058 aagttgtatgaagctatagcttccatcttagagttgtaactttctaaatcttgtgaatctctatctttaccaagttaattcctcaaccacactttttcac 25436959  T
Q  478 ttcaatctctaaatttcttttatatgttttatttacttctacattttact 527  Q
    || ||||||||  |   ||||| ||| ||||||||||||| |||||||||    
T  25436958 ttgaatctctatttcctttttacatgctttatttacttctgcattttact 25436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 376 - 527
Target Start/End: Complemental strand, 25462052 - 25461900
Alignment:
Q  376 gaaagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacac-ttttt 474  Q
    |||||||||| |||| | ||||||  |||||| |||||||  ||||||| ||||| ||| ||||||||| ||||||||||||| |||   |||| |||||    
T  25462052 gaaagttgtatgaagctatagcttctatctcatagttgtaaatttctaaatcttgtaaatctctatctttaccaagttaattccttagctacactttttt 25461953  T
Q  475 cacttcaatctctaaatttcttttatatgttttatttacttctacattttact 527  Q
    ||||| ||||||||| | | ||||| ||| |||||||| |||| |||||||||    
T  25461952 cacttgaatctctaattcttttttacatgctttatttatttctgcattttact 25461900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 531
Target Start/End: Complemental strand, 29179013 - 29178889
Alignment:
Q  407 agagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgttt 506  Q
    ||||||||| | |||||| ||||  ||||||||||||| | ||| ||||||  ||||  |||  ||||||||| |||||||||||   ||||| ||||||    
T  29179013 agagttgtaacgttctaaatcttacaaacctctatctttatcaaattaatttcttaaccacatattttcacttgaatctctaaatcctttttacatgttt 29178914  T
Q  507 tatttacttctacattttactttag 531  Q
    |||||| |||| |||||| ||||||    
T  29178913 tatttaattctgcattttcctttag 29178889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 26572489 - 26572334
Alignment:
Q  27 accgacagggtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttgaatgaaaac 126  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||  ||  |||| ||| | || ||| || || |||||||| || |||| | ||  ||    
T  26572489 accgatagggtatgagaatgaaaaatgtttgtttgatatgagttaagtccctatgaaccgaaaggtgatggtaacaagagagactaatttgcacgaggac 26572390  T
Q  127 tagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcataggc 182  Q
    ||||| || ||||||| ||||||  |||||||||| ||||||||||||||| ||||    
T  26572389 tagatattggaagagcctgaaagtgctgagatctaactaggactcttgtcacaggc 26572334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 527
Target Start/End: Original strand, 6239822 - 6239973
Alignment:
Q  378 aagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcac 477  Q
    ||||| ||||||| | |||||| ||| |||||||||||| ||||||| || || ||||| ||||||| ||||||| ||||| ||||  ||| ||||||||    
T  6239822 aagttctacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcac 6239921  T
Q  478 ttcaatctctaaat--ttcttttatatgttttatttacttctacattttact 527  Q
    || ||||  ||| |  || ||||| ||| ||||||||||||| |||||||||    
T  6239922 ttgaatcaataattcatttttttacatgctttatttacttctgcattttact 6239973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 525
Target Start/End: Original strand, 41620266 - 41620384
Alignment:
Q  407 agagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgttt 506  Q
    |||||||||  ||||||| || || |||||| ||| || ||||||||||||| ||||  | || |||| |||| ||||||||||||  ||||||||| ||    
T  41620266 agagttgtaattttctaaatcatgcaaacctttatttttaccaagttaattcgttaactaaacgtttttacttgaatctctaaattctttttatatgctt 41620365  T
Q  507 tatttacttctacatttta 525  Q
    ||||||||| | |||||||    
T  41620366 tatttacttatgcatttta 41620384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 32402398 - 32402480
Alignment:
Q  383 gtacgaagttgtagctttcat--ctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaa 463  Q
    |||||||| | ||||||||||  |||| |||||||||||||||| ||||||||| ||| ||||| ||| ||||||||| ||||    
T  32402398 gtacgaagctatagctttcataactcaaagttgtagctttctaaatcttgaaaagctccatctttaccgagttaattccttaa 32402480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 2476301 - 2476217
Alignment:
Q  33 agggtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttg 117  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||  |||| ||  | || ||| ||||| |||||||||| |||||    
T  2476301 agggtatgagaatggaaaatgtttgtttgatatgagttacgtcgctatgtactgaaagatgatgggaacaagagagattgttttg 2476217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 8876795 - 8876842
Alignment:
Q  25 agaccgacagggtatgagaatgaaaagtgtttgtttgatatgagttac 72  Q
    |||||||| || |||||||||| ||| |||||||||||||||||||||    
T  8876795 agaccgacgggatatgagaatggaaaatgtttgtttgatatgagttac 8876842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 984584 - 984674
Alignment:
Q  27 accgacagggtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttg 117  Q
    ||||| ||||| || ||||  ||| ||||||||||||||||||||| ||  |||| ||||| || ||| |||||| ||||||| |||||||    
T  984584 accgaaagggtgtgtgaattgaaaatgtttgtttgatatgagttacgtccctatgaaccaaaagttgatgggaatgagagagactattttg 984674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 32402485 - 32402534
Alignment:
Q  482 atctctaaatttcttttatatgttttatttacttctacattttactttag 531  Q
    |||||||||| | ||||| ||||||||||||||| | |||||||||||||    
T  32402485 atctctaaatcttttttacatgttttatttacttatgcattttactttag 32402534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 549
Target Start/End: Complemental strand, 14585674 - 14585574
Alignment:
Q  450 agttaattctttaatgacactttttcacttcaatctctaaatttc-ttttatatgttttatttacttctacattttactttagaaccttaacatattatc 548  Q
    ||||||||||||||  ||   ||||||||| |||||||||| | | ||||| ||  ||||||||||||| ||||||||||||| | ||||| || |||||    
T  14585674 agttaattctttaaccacgtcttttcacttgaatctctaaaatcccttttacattctttatttacttctgcattttactttagcatcttaaaatcttatc 14585575  T
Q  549 t 549  Q
    |    
T  14585574 t 14585574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 411 - 531
Target Start/End: Complemental strand, 27423329 - 27423209
Alignment:
Q  411 ttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgttttatt 510  Q
    |||||||||||||| ||||  |||| | ||| || || |||||||||  ||||  |||||||||||||| ||||||||||| | ||||||||| ||||||    
T  27423329 ttgtagctttctaaatcttacaaacatttatttttactaagttaatttcttaaccacactttttcacttgaatctctaaatcttttttatatgctttatt 27423230  T
Q  511 tacttctacattttactttag 531  Q
    |||||||  ||||||||||||    
T  27423229 tacttctgaattttactttag 27423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 19452343 - 19452087
Alignment:
Q  23 tgagaccgacagggtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttgaatga 122  Q
    ||||||||| ||||||| | | || ||| ||||||||||||| ||||||| ||| || ||||| |||  |||  | || |||||| ||| |||||||  |    
T  19452343 tgagaccgagagggtatcaaattgtaaaatgtttgtttgataagagttacgtctctacggaccgagaagtgacagaaacaagagatattgttttgaacaa 19452244  T
Q  123 aaactagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcataggctacaactcagcctctgccatc-atgtagagctattgatga 221  Q
    |||||||||||| ||||||  || |||| ||||||||||  |||||||||||||| |||| |  | ||| ||| | |||||  ||| ||| || | ||||    
T  19452243 aaactagatcttggaagagtctg-aagcgctgagatctaattaggactcttgtcaaaggcaatgattcatcctttaccatcgttgttgagttacttatga 19452145  T
Q  222 cttaacctaataatgttgcatgttaagtagtgtaagtgtaccccgagaggtgtatctt 279  Q
    | ||||||| |||| | ||||| |||||||| | | ||||||||||||||||| ||||    
T  19452144 cataacctagtaatttggcatgctaagtagtttgattgtaccccgagaggtgtgtctt 19452087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 19528733 - 19528989
Alignment:
Q  23 tgagaccgacagggtatgagaatgaaaagtgtttgtttgatatgagttacatctttatggaccaagagctgaagggaataagagagattattttgaatga 122  Q
    ||||||||| ||||||| | | || ||| ||||||||||||| ||||||| ||| || ||||| |||  |||  | || |||||| ||| |||||||  |    
T  19528733 tgagaccgagagggtatcaaattgtaaaatgtttgtttgataagagttacgtctctacggaccgagaagtgacagaaacaagagatattgttttgaacaa 19528832  T
Q  123 aaactagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcataggctacaactcagcctctgccatc-atgtagagctattgatga 221  Q
    |||||||||||| ||||||  || |||| ||||||||||  |||||||||||||| |||| |  | ||| ||| | |||||  ||| ||| || | ||||    
T  19528833 aaactagatcttggaagagtctg-aagcgctgagatctaattaggactcttgtcaaaggcaatgattcatcctttaccatcgttgttgagttacttatga 19528931  T
Q  222 cttaacctaataatgttgcatgttaagtagtgtaagtgtaccccgagaggtgtatctt 279  Q
    | ||||||| |||| | ||||| |||||||| | | ||||||||||||||||| ||||    
T  19528932 cataacctagtaatttggcatgctaagtagtttgattgtaccccgagaggtgtgtctt 19528989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 527
Target Start/End: Original strand, 8120579 - 8120732
Alignment:
Q  373 tctgaaagttgtacgaagttgtagctttcatctcagagttgtagctttctaactcttgaaaacctctatcttgaccaagttaattctttaatgacacttt 472  Q
    |||| ||||||||||||| | ||  || | ||||| | |||||||||||||| ||||| |||||| |||||| |||||||||| || ||||  ||| |||    
T  8120579 tctggaagttgtacgaagctataaattccttctcaaaattgtagctttctaaatcttgcaaacctttatctttaccaagttaactccttaaccaca-ttt 8120677  T
Q  473 ttcacttcaatctctaaatttcttttatatgttttatttacttctacattttact 527  Q
    || |||| ||||||||| |   ||||| ||| ||||||||||||| |||||||||    
T  8120678 tttacttgaatctctaattcctttttacatgctttatttacttctgcattttact 8120732  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 300
Target Start/End: Original strand, 18915436 - 18915581
Alignment:
Q  155 agatctagctaggactcttgtcataggctacaactcagcctctgccatcatgtagagctattgatgacttaacctaataatgttgcatgttaagtagtgt 254  Q
    ||||||| | |||| ||||||||||||| | | |||| ||||| ||   ||| | ||||||| || || ||||||| ||||||||||||||||||| | |    
T  18915436 agatctatcgaggattcttgtcataggccaaagctcaacctctcccgggatggaaagctattaataacctaacctagtaatgttgcatgttaagtactct 18915535  T
Q  255 aagtgtaccccgagaggtgtatcttcacatgcttgacataatggtt 300  Q
     ||||||||||||  ||||| |  || ||||||| |||||||||||    
T  18915536 cagtgtaccccgaatggtgtgttgtcccatgcttaacataatggtt 18915581  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 7635692 - 7635746
Alignment:
Q  210 agctattgatgacttaacctaataatgttgcatgttaagtagtgtaagtgtaccc 264  Q
    ||||| ||||||| |||||||||||||||||||||||| || ||||| |||||||    
T  7635692 agctactgatgacctaacctaataatgttgcatgttaaatattgtaattgtaccc 7635746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 525
Target Start/End: Original strand, 11436077 - 11436170
Alignment:
Q  432 aaacctctatcttgaccaagttaattctttaatgacactttttcacttcaatctctaaatttcttttatatgttttatttacttctacatttta 525  Q
    |||||||||| || ||||||||||||| ||||  || ||| || |||  ||||||||||| | |||||  || ||||||||||||||| |||||    
T  11436077 aaacctctatttttaccaagttaattccttaaccactcttcttaactagaatctctaaatcttttttacttgctttatttacttctacctttta 11436170  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 624760 - 624671
Alignment:
Q  113 ttttgaatgaaaactagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcataggctacaactcagcctctgccat 202  Q
    ||||||| |||||||||||||||||||||| | ||||||||||| |||| |||| |||||| |||||||| |  ||||| ||||||||||    
T  624760 ttttgaacgaaaactagatcttagaagagcctaaaagcactgaggtctaactagaactcttatcataggccatgactcatcctctgccat 624671  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 459
Target Start/End: Complemental strand, 624631 - 624378
Alignment:
Q  205 tgtagagctattgatgacttaacctaataatgttgcatgttaagtagtgtaagtgtaccccgagaggtgtatcttcacatgcttgacataatggttgagt 304  Q
    |||||||||| | ||||| ||| ||| ||||||||||||||||||| |  || |||||   ||||||||||| ||||||||||| |||| |||  | |||    
T  624631 tgtagagctactaatgacctaaactagtaatgttgcatgttaagtacttgaa-tgtacattgagaggtgtattttcacatgcttaacatgatgactaagt 624533  T
Q  305 cgagagaccccgaaggccatcagattgctaggaagttatgtgaagctataactatctacannnnnnnatctgaaagttgtacgaagttgtagctttcatc 404  Q
    ||| ||||||| || |||| ||| ||||  | ||| ||||  ||||||||||| ||||||          |||| ||||||||||| | || ||| ||||    
T  624532 cgaaagaccccaaatgccaccaggttgccggaaagctatgcaaagctataactctctacatttttcctcatgaa-gttgtacgaagctataacttccatc 624434  T
Q  405 tcagagttgtagc-tttctaactcttgaaaacctctatcttgaccaagttaattct 459  Q
    | ||||||||||| ||||||| || || |||||||||| || ||||||||||||||    
T  624433 ttagagttgtagcttttctaaatcctgcaaacctctatttttaccaagttaattct 624378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 17469317 - 17469373
Alignment:
Q  125 actagatcttagaagagcttgaaagcactgagatctagctaggactcttgtcatagg 181  Q
    |||||||||| | |||||||| ||||||| ||||||| ||||||||||| |||||||    
T  17469317 actagatcttgggagagcttggaagcactaagatctaactaggactcttttcatagg 17469373  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 18787522 - 18787580
Alignment:
Q  208 agagctattgatgacttaacctaataatgttgcatgttaagtagtgtaagtgtaccccg 266  Q
    ||||||| || |||| ||||||| ||||||||||||||||||| ||| | |||||||||    
T  18787522 agagctactggtgacctaacctactaatgttgcatgttaagtactgttattgtaccccg 18787580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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