View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_13 (Length: 558)
Name: NF11718_low_13
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_13 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 392 - 458
Target Start/End: Original strand, 7327123 - 7327189
Alignment:
| Q |
392 |
atccaaatgatcaacgtcaatcatcaaccattgtttcaatttgtctttatctggagtagcatcgtcg |
458 |
Q |
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| T |
7327123 |
atccaaatgatcaacgtcaatcatcaaccattgtttcaatttgtctttatctggagtagcatcgtcg |
7327189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 488 - 546
Target Start/End: Original strand, 7327219 - 7327277
Alignment:
| Q |
488 |
agcagcatcttcaacaccagtatcttgttctggatgctgcgatttaaaagcattgatgt |
546 |
Q |
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| T |
7327219 |
agcagcatcttcaacaccagtatcttgttctggatgctgcgatttaaaagcattgatgt |
7327277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 7352808 - 7352859
Alignment:
| Q |
55 |
agaagccttctttgttcagtagttcacattcaattcaactaattaatccatt |
106 |
Q |
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| T |
7352808 |
agaagcattctttgttcagttgttcagattcaattcaactaactaatccatt |
7352859 |
T |
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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 7353630 - 7353676
Alignment:
| Q |
55 |
agaagccttctttgttcagtagttcacattcaattcaactaattaatc |
102 |
Q |
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| T |
7353630 |
agaagcattctttgttcagttgtt-acattcaattcaactaattaatc |
7353676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 7365183 - 7365257
Alignment:
| Q |
29 |
caagaagacaatgtatgaggtcaaagagaagccttctttgttcagtagttcacattcaattcaactaattaatccatt |
106 |
Q |
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| T |
7365183 |
caagaagacaatgtatgaggtcaa--agaagcatt-ttttttcagttcttaacattcaattcaactaactaacccatt |
7365257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 55202 - 55243
Alignment:
| Q |
55 |
agaagccttctttgttcagtagttcacattcaattcaactaa |
96 |
Q |
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| T |
55202 |
agaagcattctttgttcagttgttcacattcaattcaactaa |
55243 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 40917893 - 40917852
Alignment:
| Q |
55 |
agaagccttctttgttcagtagttcacattcaattcaactaa |
96 |
Q |
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| T |
40917893 |
agaagcattctttgttcagttgttcacattcaattcaactaa |
40917852 |
T |
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