View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_16 (Length: 545)
Name: NF11718_low_16
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Complemental strand, 42361321 - 42360800
Alignment:
| Q |
17 |
agaaattttatatatgtatcttttccatactcaaattctatatatgnnnnnnnncttctgcattgtcccaataaacttcaaaattcaaggttattaatta |
116 |
Q |
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| T |
42361321 |
agaaattttatatatgtatcttttccatactcaaattctatatatgttttttttcttctgcattgtcccaataaacttcaaaattcaaggttattaatta |
42361222 |
T |
|
| Q |
117 |
ggtcaaaggcagcttttggacccttagaaatcattaattcggatactgcccataaccttgaagcttcagttatgttggatcccaatttggaagttgaggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361221 |
ggtcaaaggcagcttttggacccttagaaatcattaattcggatactgcccataaccttgaagcttcagttatgttggatcccaatttggaagttgaggt |
42361122 |
T |
|
| Q |
217 |
ttcgttgcagtcagcaaagtacttgccggacacgttgacgagccttgggtgagttgccacataacatgttgttgctgctgcctgtatataagtttatttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361121 |
ttcgttgcagtcagcaaagtacttgccggacacgttgacgagccttgggtgagttgccacataacatgttgttgctgctgcctgtatataagtttatttg |
42361022 |
T |
|
| Q |
317 |
cggtaattaaatcagagctcaaaagaaaaatacaacaacaaattaatggacataatcttttaatgcaaacaac-nnnnnnntgcatacatccaataatgt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42361021 |
cggtaattaaatcagagctcaaaagaaaaatacaacaacaaattaatggacataatcttttaatgcaaacaacaaaaaaaatgcatacatccaataatgt |
42360922 |
T |
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| Q |
416 |
attcgcacattgtaacaacctctcattcaacgactctacttctacacctataaaatatatttgtcatcacaaattcaaagtatacacttttattcattca |
515 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42360921 |
attcacacattgtaacaacctctcattcaacgactctacttctacacctataaaatatatttgtcatcacaaatttaaagtatacacttttattcattca |
42360822 |
T |
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| Q |
516 |
atattatctctcactctctgct |
537 |
Q |
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||||||||||||||||| |||| |
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| T |
42360821 |
atattatctctcactctttgct |
42360800 |
T |
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