View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_20 (Length: 481)
Name: NF11718_low_20
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 48450547 - 48451005
Alignment:
| Q |
17 |
attgctgcctcagctgcctcctatgttcaactgcgagctaagaaccttttgacccttgctgctaagtcacaacagagtaaaaatgaagattctagtggaa |
116 |
Q |
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| T |
48450547 |
attgctgcctcagctgcctcctatgttcaattgcgagctaagaaccttttgacccttgctgctaagtcacaacagagtaaaaatgaagattctagtggaa |
48450646 |
T |
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| Q |
117 |
gaaaggattctccggaacaggaagcagaaggcacttcacgtgattataaatcagaggttgcagcttatatggtggcgtcaaccgtgacttctgtggttgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450647 |
gaaaggattctccggaacaggaagcagaaggcacttcacgtgattataaatcagaggttgcagcttatatggtggcgtcaaccgtgacttctgtggttgc |
48450746 |
T |
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| Q |
217 |
atctggagagagggaaaggcaggaagcagcgacaagccttcagtcacttcattcctcaccttgtgaatggtttgtttgtgatgatttcagtaattacact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450747 |
atctggagagagggaaaggcaggaagcagcgacaagccttcagtcacttcattcctcaccttgtgaatggtttgtttgtgatgatttcagtaattacact |
48450846 |
T |
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| Q |
317 |
cgatgctttgtaattcaggtaattccttaactagtatttggtaattatagttgtaccatcaggctatataatattggttaaatttgacaaatgtttttgt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48450847 |
cgatgctttgtaattcaggtaattccttaactagtatttggtacttatagttgtaccatcaggctatataatattgattaaatttgacaaatgtttttgt |
48450946 |
T |
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| Q |
417 |
ttcatgttg----ttgcagggttcagactccttagcatcttggcaagcaaacctcttct |
471 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450947 |
ttcatgttgttgcttgcagggttcagactccttagcatcttggcaagcaaacctcttct |
48451005 |
T |
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