View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_24 (Length: 451)
Name: NF11718_low_24
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 32764252 - 32764437
Alignment:
| Q |
18 |
gtggacatggtggatacatatttatcttcatttctaattctatttcttcacctcccaaacaagacttcaaagtcttactctccaattctagtccttcaga |
117 |
Q |
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| T |
32764252 |
gtggacatggtggatacatatttatcttcatttctaattctatttcttcacctcccaaacaagacttcaaagtcttactctccaattctagtccttcaga |
32764351 |
T |
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| Q |
118 |
caaaagctccaaaatattgtctgtcacccttaacatctctttattgtattcttgtactacttccctaccacacacaaaataatata |
203 |
Q |
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| T |
32764352 |
caaaagctccaaaatattgtctgtcacccttaacatctctttattgtattcttgtactacttccctaccacacacaaaataatata |
32764437 |
T |
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Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 251 - 451
Target Start/End: Original strand, 32764485 - 32764684
Alignment:
| Q |
251 |
gtaatgaaaaatcaatatgtaacaaacggatgattttgtcacnnnnnnnnnnngttgtaacaaacgtgctcaatgtaagtacaaacctgtacgaaggagg |
350 |
Q |
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| T |
32764485 |
gtaatgaaaaatcaatatgtaacaaacggatgattttgtcacaaaaaaaaaa-gttgtaacaaacgtgctcaatgtaagtacaaacctgtacgaaggagg |
32764583 |
T |
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| Q |
351 |
acttttgggccacatctcaaaattcaccttagaatgaggagacatgagatgaaaataataatcaacccactcaaccttttgttccaggttcttggtcatc |
450 |
Q |
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| T |
32764584 |
acttttgggccacatctcaaaattcaacttagaatgaggagacatgagatgaaaataataatcaacccactcaaccttttgttcaaggttcttggtcatc |
32764683 |
T |
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