View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_25 (Length: 446)
Name: NF11718_low_25
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 1216425 - 1215991
Alignment:
| Q |
15 |
atgaatgcatacgtacataagtacatgtttatataagcatatgcttctttaagaacgcataacatattagtatttttgtactaccttaaatgaaatatta |
114 |
Q |
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| T |
1216425 |
atgaatgcatacgtacgtaagtacatgtttatataagcatatgcttctttaagaacgcataacatattagtatttttgtactaccttaaacgaaatgtta |
1216326 |
T |
|
| Q |
115 |
gaaggcgaggtttcttgttgaacactccctcctcaaattgtactttgcgttttaaatcttttggatctacttccatatctgaagcgacaaaacaaaacat |
214 |
Q |
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| T |
1216325 |
gaaggcgaggtttcttgttgaacactccctcctcaaattgtactctgcgttttaaatcttttggatctacttccatatctgaagcgacaaaacaaaacat |
1216226 |
T |
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| Q |
215 |
taggttttcttgttgaaccctccctccctcctcaaagtttggtttataaccaaaactgaatgcgttaaaactgaactgaatcgaaccatttccaattttg |
314 |
Q |
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| T |
1216225 |
taggttttcttgttgaaccctccctccctcctcaaagtttggtttataaccaaaactgaatgcgttaaaactgaactgaaccgaaccatttccaattttg |
1216126 |
T |
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| Q |
315 |
ttcgaaccaaaatatcatcaactaactgcttaggtgt--------------------tcaagacacaataaaattgacttcacaaagaactagcaagcaa |
394 |
Q |
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| T |
1216125 |
ttcgaaccaaaatatcatcaactaactacttaggtgttcaaacacaacaaatggtcctcaagacacaataaaattgacttcacaaagaactagcaagcaa |
1216026 |
T |
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| Q |
395 |
gtatttgtttgggagaagttataaaaacagcttat |
429 |
Q |
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| T |
1216025 |
gtatttgtttgggagaagttataaaaacagcttat |
1215991 |
T |
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