View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_26 (Length: 442)
Name: NF11718_low_26
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_26 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 32 - 425
Target Start/End: Original strand, 49233310 - 49233702
Alignment:
| Q |
32 |
tgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctttggtagagcctacaatatcaacgatctctttgccacttaatt |
131 |
Q |
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| T |
49233310 |
tgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctt-ggtagagcctacaatatcaacgatctgcttgccacttaatt |
49233408 |
T |
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| Q |
132 |
tgctacacggttggtctcaatgacggtttggttattatcactctgcctattgtcagaaatggttgaatctgcactctcgattacagggttctgcaaagga |
231 |
Q |
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| T |
49233409 |
tgctacacggttagtctcaatgacggtttggttattatcactctgcctattgtcagacttggttgaatctgcactctcgattacagggttctgcaaagga |
49233508 |
T |
|
| Q |
232 |
ccatgaactcgtataaatatcacaatttttgctcacatataaatgactgatcaaaaattatctgnnnnnnnatttccctcaagtgctttttcattagaca |
331 |
Q |
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| T |
49233509 |
ccaggaactcgtgtaaatatcacaatttttgctcacatataaatgactgatccaaaattatctgctattttagttacctcaagtgccttttcattagaca |
49233608 |
T |
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| Q |
332 |
tagtaaataaatttgcatctggattgtcagcttctttttcttcagcatcattcttagacaaaaattgaaccgccgtaaattagagtcatatact |
425 |
Q |
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| T |
49233609 |
tagtcaataagtttgcatctagattgtcagcttcattttcttcagcatcattcttagacacaaattgaaccaccgtaaattagagtcatatact |
49233702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 49234204 - 49234273
Alignment:
| Q |
356 |
tgtcagcttctttttcttcagcatcattcttagacaaaaattgaaccgccgtaaattagagtcatatact |
425 |
Q |
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| T |
49234204 |
tgtcagcttcattttcttcagcatcattcttcgagacagattgaaccaccataaattatagtcatatact |
49234273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 50863198 - 50862776
Alignment:
| Q |
1 |
agcttttcaaactaatccttctcaaccttattgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctttggtagagcct |
100 |
Q |
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| T |
50863198 |
agcttttcaaactaatccttctcaaccttagtgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagcttt--tagggcct |
50863101 |
T |
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| Q |
101 |
acaatatcaacgatctctttgccacttaatttgctacacggt-tggtctcaatgacggtttggttattatcactctgcctattgtcagaaatggttgaat |
199 |
Q |
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| T |
50863100 |
acaatgtcaacggtccgcttgccacttaatttgctacacggtgtagtctcaatgacggtttggttattatcaccctgcctgttgtcagacttggttgaat |
50863001 |
T |
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| Q |
200 |
ctgcactctcgattacagggttctgcaaaggaccatgaactcgtataaatatcacaatttttgctcacatataaatgactgatcaaaaattatctgnnnn |
299 |
Q |
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| T |
50863000 |
ccgcactctcgattatagggttctgcaaaggaccaggaactcgtataaatatcacaattttagcgcacatataaatgtctgatc-caaatcatctgctat |
50862902 |
T |
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| Q |
300 |
nnnatttccctcaagtgctttttcattagacatagtaaataaatttgcatctggattgtcagcttctttttcttcagcatcattcttagacaaaaattga |
399 |
Q |
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| T |
50862901 |
tttagccacctcaagtgcattttcattagacatagtcaataagtttgcatctggattgtcagcttcattttcttcagcatcattcttagacacaaattga |
50862802 |
T |
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| Q |
400 |
accgccgtaaattagagtcatatact |
425 |
Q |
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| T |
50862801 |
accgccgtaaattagagtcatatact |
50862776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 20623 - 20453
Alignment:
| Q |
1 |
agcttttcaaactaatccttctcaaccttattgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctttggtagagcct |
100 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
20623 |
agcttttcaaactaatccttctcaaccttagtgcacttcactttccgtgttttgtaggttgagttatcccccaatacagttccaagc-ttggtagggcct |
20525 |
T |
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| Q |
101 |
acaatatcaacgatctctttgccacttaatttgctacacggt-tggtctcaatgacggtttggttattatca |
171 |
Q |
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| T |
20524 |
acaatggcaacggtccgcttgtcacttaatttgctacacgatgtagtctcaatgacggtttggttattatca |
20453 |
T |
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