View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11718_low_28 (Length: 438)

Name: NF11718_low_28
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11718_low_28
NF11718_low_28
[»] chr2 (5 HSPs)
chr2 (19-416)||(2019179-2019566)
chr2 (229-319)||(38291433-38291524)
chr2 (284-341)||(38017498-38017555)
chr2 (222-347)||(38836899-38837025)
chr2 (288-340)||(41204888-41204940)
[»] chr8 (1 HSPs)
chr8 (222-319)||(13982559-13982658)
[»] chr6 (2 HSPs)
chr6 (258-319)||(10817076-10817137)
chr6 (284-341)||(15293146-15293203)
[»] chr5 (2 HSPs)
chr5 (222-318)||(11890167-11890264)
chr5 (284-341)||(5497968-5498025)
[»] chr4 (2 HSPs)
chr4 (284-341)||(12397877-12397934)
chr4 (222-325)||(31777945-31778050)
[»] scaffold1308 (1 HSPs)
scaffold1308 (288-340)||(1069-1121)
[»] chr1 (2 HSPs)
chr1 (284-319)||(5482317-5482352)
chr1 (264-340)||(36968447-36968523)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 2019179 - 2019566
Alignment:
Q  19 aaagatccttagttatatgatgttttctaaagtttgttttatttattcaaacttgatattatactaagaggggtgtattcaattaagatttgaaaaaacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |            |||||||||||||||||||||||    
T  2019179 aaagatccttagttatatgatgttttctaaagtttgttttatttattcaaacttgatattatttt------------ttcaattaagatttgaaaaaacc 2019266  T
Q  119 tttttatgatgaattttttgtgtggtatttgatcgaaactttagtttaacttaaaaattcatagtgatatttaattggaattttctagacttttgcttga 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2019267 tttttatgatgaattttttgtgtggtatttgatcgaaacttttgtttaacttaaaaattcatagtgatatttaattggaattttctagacttttgcttga 2019366  T
Q  219 tagaaataattttagatttgtgtaaaattttgcattgatatctctatgatgtaaatttaaaatttaacgatcaaatttaaaaaatatgaatcgagtaaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2019367 tagaaataattttagatttgtgtaaaattttgcattgatatctctatgatgtaaatttaaaatttaacgatcaaatttaaaaaatatgaattgagtaaaa 2019466  T
Q  319 caacattaaccgatgtaacattgatataatttaatccctc--gtgtgtgtaatacttctctctccattctcttatttctccaatgtcttctacctcatac 416  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2019467 caacattaaccgatgtaacattgatataatttaatccctcgtgtgtgtgtgatacttctctctccattctcttatttctccaatgtctcctacctcatac 2019566  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 38291524 - 38291433
Alignment:
Q  229 tttagatttgtgtaaaattttgcattgat-atctctatgatgtaaatttaaaatttaacgatcaaatttaaaaaatatgaatcgagtaaaac 319  Q
    ||||||||||||||||||||| ||| ||| || | |||| | |||||||| ||  |||| ||||||| ||||||||||||||||||||||||    
T  38291524 tttagatttgtgtaaaattttacatagatgatatatatggtataaatttacaacctaacaatcaaatataaaaaatatgaatcgagtaaaac 38291433  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 38017555 - 38017498
Alignment:
Q  284 aacgatcaaatttaaaaaatatgaatcgagtaaaacaacattaaccgatgtaacattg 341  Q
    |||| |||||||||||||||||| || ||||||||||| ||||| || ||||||||||    
T  38017555 aacgctcaaatttaaaaaatatgcatagagtaaaacaatattaagcggtgtaacattg 38017498  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 347
Target Start/End: Complemental strand, 38837025 - 38836899
Alignment:
Q  222 aaataattttagatttgtgtaaaattttgcattgat-atctctatgatgtaaatttaaaatttaacgatcaaatttaaaaaatatgaatcgagtaaaaca 320  Q
    |||| ||||||||| ||||||||| |||  || ||| |||| |||||| |||| ||| |||| ||| ||| ||||||||||||||  | ||| ||||| |    
T  38837025 aaatgattttagatctgtgtaaaaatttaaatggatgatctatatgatataaaattataattcaacaatctaatttaaaaaatatataacgattaaaata 38836926  T
Q  321 acattaaccgatgtaacattgatataa 347  Q
    | ||| | || ||||||||||||||||    
T  38836925 atattgagcggtgtaacattgatataa 38836899  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 41204940 - 41204888
Alignment:
Q  288 atcaaatttaaaaaatatgaatcgagtaaaacaacattaaccgatgtaacatt 340  Q
    |||||||| |||||||||||||||| |||||||| ||||| |  |||||||||    
T  41204940 atcaaattaaaaaaatatgaatcgaataaaacaatattaagcattgtaacatt 41204888  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 319
Target Start/End: Original strand, 13982559 - 13982658
Alignment:
Q  222 aaataattttagatttgtgtaaaattttgcattgat-atctctatgatgtaaatttaaaatttaacgatcaaat-ttaaaaaatatgaatcgagtaaaac 319  Q
    |||| ||||||||||||| |||||||||||||  || |||| |||||| |||| ||| ||||||| | |||||| | |||||| ||||||||||||||||    
T  13982559 aaatgattttagatttgtataaaattttgcatacatgatctatatgatataaacttataatttaaaggtcaaatatgaaaaaacatgaatcgagtaaaac 13982658  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 10817137 - 10817076
Alignment:
Q  258 atctctatgatgtaaatttaaaatttaacgatcaaatttaaaaaatatgaatcgagtaaaac 319  Q
    |||||| |||| |||||||| ||| ||||  |||||||||||||||||| ||||||||||||    
T  10817137 atctctgtgatataaatttacaatctaactgtcaaatttaaaaaatatgtatcgagtaaaac 10817076  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 15293146 - 15293203
Alignment:
Q  284 aacgatcaaatttaaaaaatatgaatcgagtaaaacaacattaaccgatgtaacattg 341  Q
    |||| |||||||||||||||||| |||||||||||| | ||| | || ||||||||||    
T  15293146 aacggtcaaatttaaaaaatatgcatcgagtaaaacgatattgagcggtgtaacattg 15293203  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 11890167 - 11890264
Alignment:
Q  222 aaataattttagatttgtgtaaaattttgcattgat-atctctatgatgtaaatttaaaatttaacgatcaaatttaaaaaatatgaatcgagtaaaa 318  Q
    |||| ||||||||||| ||||||||||| ||| ||| |||| | |||| || ||||| |||  || ||||||||||| |||||||| |||||||||||    
T  11890167 aaatgattttagatttatgtaaaattttacatagatgatctatttgatatagatttacaatacaaggatcaaatttagaaaatatgtatcgagtaaaa 11890264  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 5497968 - 5498025
Alignment:
Q  284 aacgatcaaatttaaaaaatatgaatcgagtaaaacaacattaaccgatgtaacattg 341  Q
    |||| |||||||| ||||||||| |||||||||||||| ||| | || ||||||||||    
T  5497968 aacggtcaaattttaaaaatatgtatcgagtaaaacaatattgagcggtgtaacattg 5498025  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 12397934 - 12397877
Alignment:
Q  284 aacgatcaaatttaaaaaatatgaatcgagtaaaacaacattaaccgatgtaacattg 341  Q
    ||||||||||||||||||||||  |||||||||||||| ||| | || ||||||||||    
T  12397934 aacgatcaaatttaaaaaatatacatcgagtaaaacaatattgagcggtgtaacattg 12397877  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 325
Target Start/End: Original strand, 31777945 - 31778050
Alignment:
Q  222 aaataattttagatttgtgtaaaattttgcattgat-atctctatgatgtaa-atttaaaatttaacgatcaaatttaaaaaatatgaatcgagtaaaac 319  Q
    |||| ||||||||||| ||||||| ||| |||  || |||| ||||||  || |||||||||| |||| |||||||||||||||||| ||||||| ||||    
T  31777945 aaatgattttagatttttgtaaaaatttacataaatgatctatatgatacaatatttaaaattcaacggtcaaatttaaaaaatatgtatcgagtcaaac 31778044  T
Q  320 aacatt 325  Q
     |||||    
T  31778045 gacatt 31778050  T

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Target: scaffold1308 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1308
Description:

Target: scaffold1308; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 1121 - 1069
Alignment:
Q  288 atcaaatttaaaaaatatgaatcgagtaaaacaacattaaccgatgtaacatt 340  Q
    ||||||||||||||||||| |||||||||||||| ||| |  |||||||||||    
T  1121 atcaaatttaaaaaatatgtatcgagtaaaacaatattgagtgatgtaacatt 1069  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 319
Target Start/End: Original strand, 5482317 - 5482352
Alignment:
Q  284 aacgatcaaatttaaaaaatatgaatcgagtaaaac 319  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5482317 aacgatcaaatttaaaaaatatgcatcgagtaaaac 5482352  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 36968523 - 36968447
Alignment:
Q  264 atgatgtaaatttaaaatttaacgatcaaatttaaaaaatatgaatcgagtaaaacaacattaaccgatgtaacatt 340  Q
    ||||| |||| ||| ||| |||| |||||||||||||||| | ||||||||||||| | ||||  || |||||||||    
T  36968523 atgatataaacttataatctaacaatcaaatttaaaaaatgtaaatcgagtaaaactatattacacggtgtaacatt 36968447  T

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