View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_3 (Length: 749)
Name: NF11718_low_3
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 7 - 734
Target Start/End: Original strand, 42590727 - 42591452
Alignment:
| Q |
7 |
ggacgttggagaatgttggttggtagtagaagaaaacatagagggatggcctacttgtataggagtagggattttgtgaaatgggttcgggccaaacacc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42590727 |
ggacgttggagaatgttggttggtagtagaagaaaacatagagggatggcctacttgtataggagtagggattttgtgaaatgggttcgggccaaacacc |
42590826 |
T |
|
| Q |
107 |
cgatccattcaaaaactactacgggtatgtgggagtgtcctgatttttacccggtttcacttaaaggtaaagtagggttggatacatcaattgaaggtaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42590827 |
cgatccattcaaaaactactacgggtatgtgggagtgtcctgatttttacccggtttcacttaaaggtaaagtagggttggatacatcaattgaaggtaa |
42590926 |
T |
|
| Q |
207 |
tcatgttaagcatgtcttaaagaatagtcttgacatgactagatttgagtactacacattgggcacatatttaactgataaggataagtatattccaagc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42590927 |
tcatgttaagcatgtcttaaagaatagtcttgacatgactagatttgagtactacacattgggcacatatttaactgataaggataagtatattccaagt |
42591026 |
T |
|
| Q |
307 |
aatacttcagaggatggttggggtggacttagatatgactatggtaatttctatgcttccaagtcattttttgatcaaagtaagaatcgtaggatacttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42591027 |
aatacttcagaggatggttggggtggacttagatatgactatggtaatttctatgcttccaagtcattttttgatcaaagtaagaatcgtaggatacttt |
42591126 |
T |
|
| Q |
407 |
ggggttgggctaatgagtctgattcccaggatgatgatgttaaaaaaggatgggctggaattcaggtacttttattttatcatacctaacctacccctta |
506 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42591127 |
ggggttgggctaatgagtctgattcccaggatgatgatgttaaaaaaggatgggctggaattcaggtac-----ttttatcatacctaacctacccctta |
42591221 |
T |
|
| Q |
507 |
ttaattaataaga---nnnnnnnnngtatatctaataatttgatattattgttcgctgcatgttcatatggaagatgnnnnnnnnnnnnnnnnnnnnnnn |
603 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42591222 |
ttaattaataagattttttttttttgtatatctaataatttgatattattgttcgctgcatgttcatatggaagatgatttatttatttttatttgtttt |
42591321 |
T |
|
| Q |
604 |
natcaattaatgcatgtgtatgtcaaaatctttaggcaattccaagaactgtgtggcttgatcctactgaaagacaattagtacaatggcctgttgaaga |
703 |
Q |
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| T |
42591322 |
aatcaattaatgcatgtgtatgtcaaaatctttaggcaattccaagaactgtgtggcttgatcctactgaaagacaattagtacaatggcctgttgaaga |
42591421 |
T |
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| Q |
704 |
attgaatgtactaagagagaaagaagttagt |
734 |
Q |
| |
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| T |
42591422 |
attgaatgtactaagagagaaagaagttagt |
42591452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 55 - 473
Target Start/End: Complemental strand, 25952328 - 25951910
Alignment:
| Q |
55 |
gcctacttgtataggagtagggattttgtgaaatgggttcgggccaaacacccgatccattcaaaaactactacgggtatgtgggagtgtcctgattttt |
154 |
Q |
| |
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||||| || ||||| |||||||||||||| |||||| || |||||||||||||| || || | || || || |||||||||||||| ||||||| |
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| T |
25952328 |
gcctatttatatagaagtagggattttgtcaaatggacccgagccaaacacccgattcactcggctaaaaccactgggatgtgggagtgtccggattttt |
25952229 |
T |
|
| Q |
155 |
acccggtttcacttaaaggtaaagtagggttggatacatcaattgaaggtaatcatgttaagcatgtcttaaagaatagtcttgacatgactagatttga |
254 |
Q |
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|||||||||| | |||| ||| ||||| || |||| | ||||||| |||||| ||||| |||||||||| ||||||||||| || | ||| |
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| T |
25952228 |
acccggtttctttggaagggaaaaacgggttagacgcatcgacgataggtaatagtgttaaacatgtgctaaagaatagccttgacatgacgaggtatga |
25952129 |
T |
|
| Q |
255 |
gtactacacattgggcacatatttaactgataaggataagtatattccaagcaatacttcagaggatggttggggtggacttagatatgactatggtaat |
354 |
Q |
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| T |
25952128 |
atactatacagttggaacgtatatccaaaataaggataagtatataccggataaaacttccgaggatggttggggtggccttagatatgattatggcaac |
25952029 |
T |
|
| Q |
355 |
ttctatgcttccaagtcattttttgatcaaagtaagaatcgtaggatactttggggttgggctaatgagtctgattcccaggatgatgatgttaaaaaag |
454 |
Q |
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|||||||||||||| ||||| ||||||| ||| |||| | | ||||| | ||||| ||||| ||||| || ||| || | || ||||||||||| |||| |
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| T |
25952028 |
ttctatgcttccaaatcattctttgatccaagcaagagtagaaggatcatatggggatgggcaaatgaatcagataccaaagaagatgatgttaagaaag |
25951929 |
T |
|
| Q |
455 |
gatgggctggaattcaggt |
473 |
Q |
| |
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||||||| ||||||||||| |
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| T |
25951928 |
gatgggcaggaattcaggt |
25951910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 637 - 731
Target Start/End: Complemental strand, 25951820 - 25951726
Alignment:
| Q |
637 |
aggcaattccaagaactgtgtggcttgatcctactgaaagacaattagtacaatggcctgttgaagaattgaatgtactaagagagaaagaagtt |
731 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||| ||| ||||||||| |||||||| |||||| ||||||||||||||||| |
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| T |
25951820 |
aggcaattccaagaactgtgtggcttgatcctggtggaagacagttaagacaatggccagttgaagagttgaataggttaagagagaaagaagtt |
25951726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 4142602 - 4142564
Alignment:
| Q |
342 |
tgactatggtaatttctatgcttccaagtcattttttga |
380 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||| |
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| T |
4142602 |
tgactatggtaatttttatgcttcaaagtcattttttga |
4142564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 42006292 - 42006345
Alignment:
| Q |
330 |
tggacttagatatgactatggtaatttctatgcttccaagtcattttttgatca |
383 |
Q |
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||||||||| ||||| ||||||| ||||||||||||||| |||||| |||||| |
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| T |
42006292 |
tggacttaggtatgattatggtatattctatgcttccaagacattttatgatca |
42006345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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