View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_31 (Length: 412)
Name: NF11718_low_31
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 21 - 398
Target Start/End: Complemental strand, 9421786 - 9421406
Alignment:
| Q |
21 |
agagagaaggttgaaatgaaaatgatatcataaccgttatagttatgtaatgtaaacatactttacacatgagattaaaatactctactaggaccgtata |
120 |
Q |
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| T |
9421786 |
agagagaaggttgaaatgaaaatgaaatcataaccgttatagttatgtaatgtaaacatactttacacatgagattaaaatactctactaggaccgtatg |
9421687 |
T |
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| Q |
121 |
taacggataaataataggtattatggttattaattggtggtaatgattttgtttagtgggggg---agataaataaatgggtaagttttaatttttgttg |
217 |
Q |
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| T |
9421686 |
taacggataaataataggtattatggttattaattggtggtaatgattttgtttagtgggggggggagataaataaatgggtaagttttaatttttgttg |
9421587 |
T |
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| Q |
218 |
tttttggacaaatcattggagctccgccgccacgaatgcatgacgaaatcttggaaaagtatgctcctataaagtttttgttgcacgcgctatcatgctt |
317 |
Q |
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| T |
9421586 |
tttttggagaaatcattggagctccgccgccacgaatgcatgacgaaatcttggaaaagtatgctcctataaagtttttgttgcacgcgctatcatgctt |
9421487 |
T |
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| Q |
318 |
tgttcttaaatgttcacttgataactttactatatagaagactcttcatatactgtatnnnnnnnttagaagactcttcat |
398 |
Q |
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| T |
9421486 |
tgctcttaaatgttcacttgataactttactatatagaagactcttcatatactgtataaaaaaattagaagactcttcat |
9421406 |
T |
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