View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_35 (Length: 391)
Name: NF11718_low_35
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_35 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 3684690 - 3684318
Alignment:
| Q |
13 |
cataaaacaaaacacaaatcctaccacactcctagtgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataa |
112 |
Q |
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| T |
3684690 |
cataaaacaaaacacaaatcctaccacactcctattgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataa |
3684591 |
T |
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| Q |
113 |
gcaagcagactcgaacaaccccacttaaagacacccaaacaagcaccccacatagtgagactaccaactccagcagagaattggttccaccagccactca |
212 |
Q |
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| T |
3684590 |
ggaagcaggttcgaaaaaccccacttaaagacacccaaacaagcaccccacacagtgagactaccgactccagcagagaactggttccaccagccactca |
3684491 |
T |
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| Q |
213 |
tagtgggaacaaggagcatcaatgtgtttctcaaaaaaccaataccacggccacggctcttatgaactaattcctccacatttagtacttactagaaaac |
312 |
Q |
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| T |
3684490 |
tagtgggaacaaggagaatcaatgtgtttcccaaaaaaccaatacca------cggctcttatgaactaagtcctccacatttagtacttactagaaaac |
3684397 |
T |
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| Q |
313 |
agaacatcattaaaggatgtctatatagaccacacgacagtatgtcaaaccaacaaaaaatcacaagtaatcttttctc |
391 |
Q |
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| T |
3684396 |
aaaacatcattaaaggatgtctatatagaccacacgacagtatgtcaaaccaacaaaatatcacacctaatcttttctc |
3684318 |
T |
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