View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_36 (Length: 380)
Name: NF11718_low_36
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 2 - 363
Target Start/End: Original strand, 24563802 - 24564163
Alignment:
| Q |
2 |
tagataagttcgcaactgctttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaattccaatcattcactcatttcacttcactta |
101 |
Q |
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| T |
24563802 |
tagataagttcgcaactgctttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaattccaatcattctctcatttcacttcactta |
24563901 |
T |
|
| Q |
102 |
taataagatttagtgaaaaaggttacttgctcaccccaaaataaagtgatttttccatctctattagttttcccctttactcactgaaatacgaagaaaa |
201 |
Q |
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| T |
24563902 |
taataagatttagtgaaaaaggttacttgctcaccccaaaataaagtgatttttccatctctattagttttcccctttactcactgaaatacgaagaaaa |
24564001 |
T |
|
| Q |
202 |
agaaagaaataaaagattgaaacccaatataaattacatcattttttcactttnnnnnnnnnnnnnnntaaaggaagtaagatgtatctcaccatcattt |
301 |
Q |
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| T |
24564002 |
agaaagaaataaaagattgaaacccaatataaattacatcattttttcactttaaaaaaaggaaaaaataaaggaagtaagatgtatctcatcatcattt |
24564101 |
T |
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| Q |
302 |
atgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctctattgcaaagcaaga |
363 |
Q |
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| T |
24564102 |
atgtgtgatcaccgttaaaaatcattttcatcatcttccaatcgctctattgcaaagcaaga |
24564163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 347
Target Start/End: Complemental strand, 45535928 - 45535593
Alignment:
| Q |
22 |
ttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaattccaatcattcactcatttcacttcac--ttataataagatttagtgaaa |
119 |
Q |
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| T |
45535928 |
ttaatttctagactcatgtaaatccttgtatacccgttgaaatcattaattccaatcattctctcatttcaattcacacttataatacgatttagtgaaa |
45535829 |
T |
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| Q |
120 |
aagg-----ttacttgctcaccccaaaataaagtgatttttccatctct--attagttttcccctttactcactgaaatacgaagaaaaagaaagaaata |
212 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||| | ||||||||||||||||||| |
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| T |
45535828 |
aaggaaaggttacttgctcacctcaaaataaagtgatttttccatctctctattagttttcccctttactctctaaaaaatgaagaaaaagaaagaaata |
45535729 |
T |
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| Q |
213 |
aaagattgaaacccaatataaat--tacatcattttttcactttnnnnnnnnnnnnnnntaaaggaagtaagatgtatctcaccatcatttatgtgtgat |
310 |
Q |
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| T |
45535728 |
aaagattgaaacctaatataaattatacatcaatttttcaatttaaaaaaagggaaaaagaatggaagtaagacgtatctcaccatcatttatgtgtgtt |
45535629 |
T |
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| Q |
311 |
caccgttaaaaatcattttcaccatcttccaatcgct |
347 |
Q |
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| T |
45535628 |
ca-cgttaaaaatcattttcaccatcttccaatcgct |
45535593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 174 - 349
Target Start/End: Original strand, 44337799 - 44337971
Alignment:
| Q |
174 |
ccctttactcactgaaatacgaagaaaaagaaagaaataaaagattgaaacccaatataaattacatcattttttcactttnnnnnnnnnnnnnnntaaa |
273 |
Q |
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|||||||||| |||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | || |
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| T |
44337799 |
ccctttactctctgaaaaatgaagaaaaagaatgaaataaaagattgaataccaatataaattacatcattttttcacacttaaaaaaataaag---aat |
44337895 |
T |
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| Q |
274 |
ggaagtaagatgtatctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatcttccaatcgctct |
349 |
Q |
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||| || |||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
44337896 |
ggaggtcagatgtatctcaccataatttatgtatgatcatcgttagaaatcattttcaccatcttccaattgctct |
44337971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 364
Target Start/End: Original strand, 9798760 - 9799074
Alignment:
| Q |
58 |
ttgaaatcattaattccaatcattcactcatttcacttcacttataataagatttagtgaaaa--------------aggttacttgctcaccccaaaat |
143 |
Q |
| |
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||||||||||||||| | ||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||| ||| |
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| T |
9798760 |
ttgaaatcattaatttctatcattctctcatttcacttcacttataatacgatttagtgaaaaggaaataatagaagagtttacttgctcgccccataat |
9798859 |
T |
|
| Q |
144 |
aaagtgatttttccatctc--tattagttttcccctttactcactgaaatacgaagaaaaagaaagaaataaaagattgaaacccaatataaattacatc |
241 |
Q |
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| T |
9798860 |
aaagtgatttttccatctcactattagttttccctgttactcccttcaa-------aaaaagaaa-------aagattgaaacccaatataaattacatt |
9798945 |
T |
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| Q |
242 |
attttttcactttnnnnnnnnnnnnnnntaaaggaagtaagatgta-----tctcaccatcatttatgtgtgatcaccgttaaaaatcattttcaccatc |
336 |
Q |
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||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
9798946 |
attttttcactttaaaaaaaggaaaaaataatggaagtaagatgtaatgtatcttaccatcatttatgtgtgattaccgttaaagatccttttcaccatc |
9799045 |
T |
|
| Q |
337 |
ttccaatcgctc-tattgcaaagcaagat |
364 |
Q |
| |
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|||| |||||| |||||||||||||||| |
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| T |
9799046 |
ttccggtcgctcatattgcaaagcaagat |
9799074 |
T |
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