View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_37 (Length: 380)
Name: NF11718_low_37
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 28073438 - 28073092
Alignment:
| Q |
18 |
gcagagacgtagggaaaatagaattttatttattgcattataggtgagattttaaagttcacataaaaattgaaccagataaataaaatctacctaaaga |
117 |
Q |
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| T |
28073438 |
gcagagacgtagggaaaatagaattttatttattgcattataggtgagattttaaagttcacataaaaattgaaccagataaataaaatctacctaaaga |
28073339 |
T |
|
| Q |
118 |
ggatatcatgaaatacttttaaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073338 |
ggatatcatgaaatacttttaaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattct |
28073239 |
T |
|
| Q |
218 |
tgagaaccatactctcaggaacacccattgttgcatgccaactataccattcagccactcgtactctcctgcatgacagacaagatagtatctatcattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073238 |
tgagaaccatactctcaggaacacccattgttgcatgccaactataccattcagccactcgtactctcctgcatgacagacaagatagtatctatcattt |
28073139 |
T |
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| Q |
318 |
gtagattaggttggagcgagcttgtgatggagacaactgcaaatact |
364 |
Q |
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| T |
28073138 |
gtagattaggttggagcgagcttgtgatggagacaactgcaaatact |
28073092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 38 - 297
Target Start/End: Complemental strand, 28090349 - 28090098
Alignment:
| Q |
38 |
gaattttatttattgcattataggtgagattttaaagttcacataaaaattgaaccagataaataaaatctacctaaagaggatatcatgaaatactttt |
137 |
Q |
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|||||||||||| ||||| |||||||||||||||||| ||||||| | ||||||| |||||||||||| || ||||||| |||||||||| | |||| |
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| T |
28090349 |
gaattttatttaaagcattttaggtgagattttaaagtccacataacatctgaaccatataaataaaatcgacttaaagagtatatcatgaactcttttt |
28090250 |
T |
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| Q |
138 |
aaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactctcagga |
237 |
Q |
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| T |
28090249 |
aaatgc--------atactttattaacaaatttgaagagatggcgtcttatgtctgtctggagatcttctggcaaattttccagaaccattttctcagga |
28090158 |
T |
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| Q |
238 |
acacccattgttgcatgccaactataccattcagccactcgtactctcctgcatgacaga |
297 |
Q |
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|||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
28090157 |
acaccccttgttgcagcccaactataccgttcagcctgacgtactctcctgcatgacaga |
28090098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 122 - 295
Target Start/End: Complemental strand, 28033957 - 28033784
Alignment:
| Q |
122 |
atcatgaaatacttttaaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgag |
221 |
Q |
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|||||||| | |||| ||||| | ||||||||| || |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
28033957 |
atcatgaacttctttaaaatgttccaatgcatacatttttaacaaatttgaagagatgacgtcgtatgtctgtctggagatcttctggcaaattctccag |
28033858 |
T |
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| Q |
222 |
aaccatactctcaggaacacccattgttgcatgccaactataccattcagccactcgtactctcctgcatgaca |
295 |
Q |
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| T |
28033857 |
aaccattttctcagaaacacctcttgttgcagcccaactatactgttcagcctgtcgtactctcctgcatgaca |
28033784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 317
Target Start/End: Complemental strand, 28000339 - 28000169
Alignment:
| Q |
147 |
aatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactctcaggaacacccatt |
246 |
Q |
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|||||||||||| ||||| |||||| ||| ||| |||| ||||||| | |||||||||||||||||||||| | || ||| |||||| ||||||| || |
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| T |
28000339 |
aatgcatacttttttaacgaatttgaagatatgacgtcgtatgtctatttggagatcttctggcaaattctccaaaatcattttctcagaaacacccctt |
28000240 |
T |
|
| Q |
247 |
gttgcatgccaactataccattcagccactcgtactctcctgcatgacagacaagatagtatctatcattt |
317 |
Q |
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| T |
28000239 |
gttgcagcccaactataccgttcagcctgccgtactctcctgcatgacaaacaagatagtatccatcattt |
28000169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 123 - 325
Target Start/End: Complemental strand, 27915720 - 27915527
Alignment:
| Q |
123 |
tcatgaaatacttttaaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgaga |
222 |
Q |
| |
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||||||||| |||||||||| | |||||||||||| ||||||||| || ||| ||| |||| || ||| ||||||||| || ||||||||||| |||| |
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| T |
27915720 |
tcatgaaattcttttaaatgttcaaatgcatacttttttaacaaatctgaagatatgacgtcgtagatctatctggagattttttggcaaattctcgaga |
27915621 |
T |
|
| Q |
223 |
accatactctcaggaacacccattgttgcatgccaactataccattcagccactcgtactctcctgcatgacagacaagatagtatctatcatttgtaga |
322 |
Q |
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||| | |||||||||||| || ||||||||||| ||||||||||| | |||||||||||||||||| |||| |||||||| |||||||||| | |
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| T |
27915620 |
accgttctctcaggaaca-------tt--atgccaactatcccattcagccagtagtactctcctgcatgacaaacaatatagtatccatcatttgtaca |
27915530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 325
Target Start/End: Complemental strand, 28016267 - 28016098
Alignment:
| Q |
147 |
aatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactctcaggaacacccatt |
246 |
Q |
| |
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|||||||||||| |||||||| ||| ||| || |||| ||||||| ||||||| | |||||||||||||| ||||||| | || |||||| || |
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| T |
28016267 |
aatgcatacttttttaacaaaattgaagatataacgtcgtatgtctatctggaggttttctggcaaattctcgagaaccgttctttcaggagca------ |
28016174 |
T |
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| Q |
247 |
gttgcatgccaactataccattcagccactcgtactctcctgcatgacagacaagatagtatctatcatttgtagatta |
325 |
Q |
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| T |
28016173 |
-tt--atgccgactattccattcagcctgtagtactctcctgcatgacatacaagatcgtatccatcatttgtacatta |
28016098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 53 - 297
Target Start/End: Complemental strand, 1439037 - 1438793
Alignment:
| Q |
53 |
cattataggtgagattttaaagttcacataaaaattgaaccagataaataaaatctacctaaagaggatatcatgaaatacttttaaatgcttgaatgca |
152 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||| ||||||| | || ||||||||||||||||||| |
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| T |
1439037 |
cattataggtgagattttaaagttcacataacatctgaactagataaataaaatctacttaaagagtatatcatttactatttttaaatgcttgaatgca |
1438938 |
T |
|
| Q |
153 |
tactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactctcaggaacacccattgttgca |
252 |
Q |
| |
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|||||| || ||||||||| ||||||||||||| |||||| |||||||||||||||||||||| | ||| |||| ||||||||| ||| |||||||| |
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| T |
1438937 |
tactttttttacaaatttgaagagatggcgtctaatgtctttctggagatcttctggcaaattttctagagccatttcctcaggaacgccccttgttgca |
1438838 |
T |
|
| Q |
253 |
tgccaactataccattcagccactcgtactctcctgcatgacaga |
297 |
Q |
| |
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|||| |||||| ||||||| | ||||||||||||||| ||||| |
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|
| T |
1438837 |
gcccaagtataccgttcagcctcccgtactctcctgcataacaga |
1438793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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