View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_38 (Length: 375)
Name: NF11718_low_38
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 49513480 - 49513827
Alignment:
| Q |
20 |
actgttatgagcaaaattcgaaatgtctcgtctggtattttcaaatatatcacttctttttaatcattattagtgtt---gttgttgttataaaatagga |
116 |
Q |
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| T |
49513480 |
actgttatgagcaaaattcgaaatgtctcgtctggtattttcaaatctatcacttctttttaatcattattagtgttgttgttgttgttataaaatagga |
49513579 |
T |
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| Q |
117 |
acacgaagaggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaactatgtgaaggtgtgtatgtaagtcaacatttgg |
216 |
Q |
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| T |
49513580 |
acacgaagaggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaactatgtgaaggtgtgtatgtaagtcaacatttgg |
49513679 |
T |
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| Q |
217 |
aattgaatattgttaaacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaagtaatgtgta |
316 |
Q |
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| T |
49513680 |
aatttaatattgttaaacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaagtaatgtgta |
49513779 |
T |
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| Q |
317 |
aacatggtgaataagacaacatcattcttttttcttcttcctaccttt |
364 |
Q |
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| T |
49513780 |
aacatggtgaataagacaacatcattcttttttcttcttcctaccttt |
49513827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 27745302 - 27745458
Alignment:
| Q |
207 |
caacatttggaattgaatattgttaaacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaa |
306 |
Q |
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| T |
27745302 |
caacatttagaattgaagattgttgaacttccttttaagcattcattgtatcattctgtaagtattgcatggtgttccaagcttactttaacactgaaga |
27745401 |
T |
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| Q |
307 |
gtaatgtgtaaacatggtgaataagacaacatcattcttttttcttcttcctaccttt |
364 |
Q |
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| T |
27745402 |
gtaatgtgtaaacatggagactta-aaaatatcgttcttttttcttcttcataccttt |
27745458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 27744743 - 27744857
Alignment:
| Q |
86 |
ttattagtgttgttgttgttataaaataggaacacgaaga---ggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaa |
182 |
Q |
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| T |
27744743 |
ttattagtgtttttgttgttattaaataggatcaggaagacgaggtatcggtgattgataaagatacttataggcttgctgttgtcaacatggactggaa |
27744842 |
T |
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| Q |
183 |
ctatgtgaaggtgtg |
197 |
Q |
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| T |
27744843 |
ctatgtgaaggtgtg |
27744857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 38529668 - 38529589
Alignment:
| Q |
121 |
gaagaggtatcagtgattgagaaagatactcataggctggctgttgtctacatggactggaactatgtgaaggtgtgtat |
200 |
Q |
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| T |
38529668 |
gaagaggtagcagagattgagaaagaaacacataggttggctgttgttaatatggactggcggtatgtgaaggtgcgtat |
38529589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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