View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_39 (Length: 372)
Name: NF11718_low_39
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 14669178 - 14668853
Alignment:
| Q |
11 |
cagagagcctggaaagtgaagtgtgatatttagcttcatacagctaattacatgaaaggtcaatcattcttaccacattgtcaggttgtcactgtcctat |
110 |
Q |
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| T |
14669178 |
cagatagcctggaaagtgaagtgtgatatttagctccatacagcttattacatgaaaggtcaatcattcttaccacattgtcaggttatcactgtcctat |
14669079 |
T |
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| Q |
111 |
aactcgtgacctttggaaaaccgagataagattctttgtgtgtagttgtcattctgaaaccaaagccatatgtgaatactgatttcttggagaacaaaga |
210 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14669078 |
aactcgtgacctttggaaaaccaagacaagattctttgtgtgtagttgtcattctgaaaccaaagccatatgtgaatactgatttcttggagaacaaaga |
14668979 |
T |
|
| Q |
211 |
aacaagtcagtgaataaggcaagccagttcattctttagtgactactgcatactgatatatgatcatatattttaagctagtttttcttaagttatgtat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14668978 |
aacaagtcagtgaataaggcaagccagttcattctttagtgactactgcatactgatatatgatcatatattttaagctagtttttcttaagttatgtat |
14668879 |
T |
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| Q |
311 |
tagtatatcaagctattgccattagg |
336 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14668878 |
tagtatatcaagctattgccattagg |
14668853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 14706726 - 14707026
Alignment:
| Q |
11 |
cagagagcctggaaagtgaagtgtgatatttagcttcatacagctaattacatgaaaggtcaatcattcttaccacattgtcaggttgtcactgtcctat |
110 |
Q |
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|||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14706726 |
cagatagccaggaaagtgaagtgtgatatttagctccatacagcttattacatgaaaggtcaatcattcttaccacattgtcaggttgtcactgtcctat |
14706825 |
T |
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| Q |
111 |
aactcgtgacctttggaaaaccgagataagattctttgtgtgtagttgtcattctgaaaccaaagccatatgtgaatactgatttcttggagaacaaaga |
210 |
Q |
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| T |
14706826 |
aactcgtgacttttggaaaaccaagacaagattctttgtgtgtagttgtcattctgaaaccaaagccatatatgaataccgatttcttggagaacaaaga |
14706925 |
T |
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| Q |
211 |
aacaagt--cagtgaataaggcaagccagttcattctttagtgactactgcatactgatatatgatcatatattttaagctagtttttcttaagttatgt |
308 |
Q |
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||||| | |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14706926 |
aacaactcacagtgaataaggaaagctagttcattctttagtgac-------tactgatatatgatcatatattttaagctagtttttcttaatttatgt |
14707018 |
T |
|
| Q |
309 |
attagtat |
316 |
Q |
| |
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|||||||| |
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| T |
14707019 |
attagtat |
14707026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 50 - 287
Target Start/End: Complemental strand, 14653721 - 14653485
Alignment:
| Q |
50 |
acagctaattacatgaaaggtcaatcattcttaccacattgtcaggttgtcactgtcctataactcgtgacctttggaaaaccgagataagattctttgt |
149 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| | | |||||||||||| | | |||||||||||| |
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| T |
14653721 |
acagcttattacatgaaaggtcaatcattcttaccacattgtcaagttgtctctgtcctttaactcatca-ctttggaaaaccaaaacaagattctttgt |
14653623 |
T |
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| Q |
150 |
gtgtagttgtcattctgaaaccaaagcc-------atatgtgaatactgatttcttggagaacaaagaaacaagtcagtgaataaggcaagccagttcat |
242 |
Q |
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| T |
14653622 |
gtgcagttataattttgaaaccaaagccatagcctatataaggaaactgattacttggagaacaaagaggcaactcagtgaataagggaagctagttcat |
14653523 |
T |
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| Q |
243 |
tctttagtgactactgcatactgatatatgatcatatattttaag |
287 |
Q |
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| T |
14653522 |
tctttagtgac-------tactgatatatgatcatatattttaag |
14653485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 50 - 287
Target Start/End: Complemental strand, 14663512 - 14663276
Alignment:
| Q |
50 |
acagctaattacatgaaaggtcaatcattcttaccacattgtcaggttgtcactgtcctataactcgtgacctttggaaaaccgagataagattctttgt |
149 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| | | |||||||||||| | | |||||||||||| |
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| T |
14663512 |
acagcttattacatgaaaggtcaatcattcttaccacattgtcaagttgtctctgtcctttaactcatca-ctttggaaaaccaaaacaagattctttgt |
14663414 |
T |
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| Q |
150 |
gtgtagttgtcattctgaaaccaaagcc-------atatgtgaatactgatttcttggagaacaaagaaacaagtcagtgaataaggcaagccagttcat |
242 |
Q |
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||| |||| | ||| ||||||||||||| |||| | | ||||||| ||||||||||||||| ||| ||||||||||||| |||| ||||||| |
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| T |
14663413 |
gtgcagttataattttgaaaccaaagccatagcctatataaggaaactgattacttggagaacaaagaggcaactcagtgaataagggaagctagttcat |
14663314 |
T |
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| Q |
243 |
tctttagtgactactgcatactgatatatgatcatatattttaag |
287 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
14663313 |
tctttagtgac-------tactgatatatgatcatatattttaag |
14663276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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