View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11718_low_40 (Length: 367)

Name: NF11718_low_40
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11718_low_40
NF11718_low_40
[»] scaffold0044 (1 HSPs)
scaffold0044 (18-354)||(88157-88493)
[»] chr3 (10 HSPs)
chr3 (18-84)||(2679151-2679217)
chr3 (29-84)||(2687069-2687124)
chr3 (28-121)||(9585876-9585969)
chr3 (28-156)||(764299-764427)
chr3 (18-120)||(2697460-2697562)
chr3 (18-82)||(988688-988752)
chr3 (107-164)||(9595399-9595456)
chr3 (108-164)||(7325171-7325227)
chr3 (76-164)||(7443736-7443824)
chr3 (29-84)||(9497189-9497245)
[»] chr7 (1 HSPs)
chr7 (18-163)||(27754859-27755004)
[»] chr4 (1 HSPs)
chr4 (18-133)||(20020503-20020618)
[»] scaffold0015 (1 HSPs)
scaffold0015 (23-103)||(41103-41187)
[»] chr6 (1 HSPs)
chr6 (18-160)||(24418154-24418296)


Alignment Details
Target: scaffold0044 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 88493 - 88157
Alignment:
Q  18 gttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcagaggcaactaagttgtaggagcagcttcactggaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  88493 gttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcagaggcaactaagttgtaggagaagcttcactggaa 88394  T
Q  118 gcctgcagagaatttcagagatcacatcgaatggaagagttggaagcagcgacgatgatagggtttcggtggaggtgttcaattgctgcctcttactggc 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  88393 gcctgcagagaatttcagagatcacatcgaacggaagagttggaagcagcgacgatgatagggtttcggtggaggtgttcaattgctgcctcttagtggc 88294  T
Q  218 agccgtgagtggcagagaagaagccatgttggtttggtcgtcggccatttgacgtgtgtaaagtgatggaagaagcgtttagcgagaaagtgcgtcgggt 317  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| ||||||     
T  88293 agccgtgagtggcagagaagaagccatgtcggttcggtcgtcggccatttgacgtacgtaaagtgacggaagaagcgtttagcgagaaagtgtgtcggga 88194  T
Q  318 tcaatgtaactttgcagtaacaatgttttcgttctct 354  Q
    |||||||||||||||||||||||||||||||||||||    
T  88193 tcaatgtaactttgcagtaacaatgttttcgttctct 88157  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 2679151 - 2679217
Alignment:
Q  18 gttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcaga 84  Q
    ||||||| || ||||||||| || | |||||||||||||||||| ||||||||||||||||||||||    
T  2679151 gttgacacgctaaggtgcttcttagcaaattttggatcggagatcagagatttccatgacttgcaga 2679217  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 2687069 - 2687124
Alignment:
Q  29 aaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcaga 84  Q
    ||||||||| || | |||||||||||||||||| ||||||||||||||||||||||    
T  2687069 aaggtgcttcttagcaaattttggatcggagatcagagatttccatgacttgcaga 2687124  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 9585876 - 9585969
Alignment:
Q  28 gaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcagaggcaactaagttgtaggagcagcttcactggaagcct 121  Q
    |||| ||||| ||||| ||||| ||||||||||||||||||||| | || |||| ||||||   |||||| ||||| |||||||| ||||||||    
T  9585876 gaagatgcttctttgtgaatttaggatcggagattagagatttcaacgatttgccgaggcactgaagttgaaggaggagcttcaccggaagcct 9585969  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 764299 - 764427
Alignment:
Q  28 gaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcagaggcaactaagttgtaggagcagcttcactggaagcctgcagag 127  Q
    |||| ||||| ||||| ||||| |||||||| ||||||||||||||  | || | ||||||   |||||| ||||| ||||||||||||||||| ||||     
T  764299 gaagatgcttctttgtgaatttaggatcggaaattagagatttccacaattttccgaggcactgaagttgaaggaggagcttcactggaagcctacagaa 764398  T
Q  128 aatttcagagatcacatcgaatggaagag 156  Q
    ||| ||||  | || |||||| |||||||    
T  764399 aatctcagcaaccagatcgaagggaagag 764427  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 2697460 - 2697562
Alignment:
Q  18 gttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcagaggcaactaagttgtaggagcagcttcactggaa 117  Q
    |||||||||| ||||||||| || |||||  | | ||| | ||||||||| ||||||||||| |||| ||| | |||||||||||| | ||||||||| |    
T  2697460 gttgacatgctaaggtgcttcttggtaaaactggtatcagtgattagagaattccatgacttacagacgcatcgaagttgtaggagtaacttcactggga 2697559  T
Q  118 gcc 120  Q
    |||    
T  2697560 gcc 2697562  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 988752 - 988688
Alignment:
Q  18 gttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgca 82  Q
    ||||||| || ||||||||||||||  ||||| ||||| ||||||| ||| ||||||||||||||    
T  988752 gttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattccatgacttgca 988688  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 9595399 - 9595456
Alignment:
Q  107 cttcactggaagcctgcagagaatttcagagatcacatcgaatggaagagttggaagc 164  Q
    |||||| ||||||||||| ||||||||||  || | |||||| |||||||||||||||    
T  9595399 cttcacaggaagcctgcatagaatttcagcaattagatcgaaaggaagagttggaagc 9595456  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 7325171 - 7325227
Alignment:
Q  108 ttcactggaagcctgcagagaatttcagagatcacatcgaatggaagagttggaagc 164  Q
    ||||| ||||||||||||||||| ||||  |  |||||||| |||||||||||||||    
T  7325171 ttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaagc 7325227  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 7443736 - 7443824
Alignment:
Q  76 acttgcagaggcaactaagttgtaggagcagcttcactggaagcctgcagagaatttcagagatcacatcgaatggaagagttggaagc 164  Q
    |||| |||||||| | |||||||| ||| |  ||||| ||||||||||||||||| |||| ||  | |||||| |||||||| ||||||    
T  7443736 acttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaagc 7443824  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 9497189 - 9497245
Alignment:
Q  29 aaggtgcttttttgtaaattttggatcggagattagagattt-ccatgacttgcaga 84  Q
    ||||||||| || | || ||||||||||||||| |||||||| ||||||||||||||    
T  9497189 aaggtgcttcttagaaatttttggatcggagatgagagatttaccatgacttgcaga 9497245  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 27755004 - 27754859
Alignment:
Q  18 gttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcagaggcaactaagttgtaggagcagcttcactggaa 117  Q
    ||||||| ||||||||| || || | |||||||||||||||||||| ||| ||  | ||||| |||||||| | |||||| || || | |||||| ||||    
T  27755004 gttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaacttcacgggaa 27754905  T
Q  118 gcctgcagagaatttcagagatcacatcgaatggaagagttggaag 163  Q
    || |||| ||||| ||   ||| | |||||||| |||||| |||||    
T  27754904 gcatgcacagaatctcttcgatgagatcgaatgtaagagtgggaag 27754859  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 20020503 - 20020618
Alignment:
Q  18 gttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcagaggcaactaagttgtaggagcagcttcactggaa 117  Q
    |||||||||||||||||||| || | |||||| ||||  ||||| ||||| |||||||| || || |  || | |||||| ||||| ||||||||||| |    
T  20020503 gttgacatgcgaaggtgcttcttggaaaatttaggatgagagatgagagaattccatgaattacatacacatcgaagttgaaggaggagcttcactggta 20020602  T
Q  118 gcctgcagagaatttc 133  Q
     ||| || ||||||||    
T  20020603 acctacacagaatttc 20020618  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 41103 - 41187
Alignment:
Q  23 catgcgaaggtgcttttttg-taaattttggatcg---gagattagagatttccatgacttgcagaggcaactaagttgtaggag 103  Q
    |||||||||||| ||||||| ||||||| |||||    ||||||||||| |||||||||||||||| |||||  | |||||||||    
T  41103 catgcgaaggtgtttttttgataaatttaggatcatttgagattagagaattccatgacttgcagacgcaacggaattgtaggag 41187  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 24418154 - 24418296
Alignment:
Q  18 gttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgacttgcagaggcaactaagttgtaggagcagcttcactggaa 117  Q
    ||||||| |||||||||||| ||||  ||||| ||||| |||||||  || ||  | ||||||||||| || | |||||| ||||| | |||||| ||||    
T  24418154 gttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaa 24418253  T
Q  118 gcctgcagagaatttcagagatcacatcgaatggaagagttgg 160  Q
    |||| || ||||| ||||  |  | |||||| |||||||||||    
T  24418254 gcctacacagaatctcagctacaagatcgaagggaagagttgg 24418296  T

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