View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_42 (Length: 358)
Name: NF11718_low_42
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 47 - 342
Target Start/End: Original strand, 29228013 - 29228308
Alignment:
| Q |
47 |
ttttagaatttcaatacattaaaactatagtaacagtaaatttctctggtatattttagagaccataatgaatatatttattgtatgaaaaatgagtcaa |
146 |
Q |
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| T |
29228013 |
ttttagaatttcaatacgttaaaactatagtaacagtaaatttctctggtatattttagagaccataatgaatatatttattgtatgaaaaatgagtcaa |
29228112 |
T |
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| Q |
147 |
ttggttcatgccttattccattctcttatctgtttgatacatagtccattgttgatattaaattttccaacaacttgagggtaaggcactataagtcgac |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29228113 |
ttggttcatgccttattccattctcttatctgtttgatacatggtgcattgttgatattaaattttccaacaacttgagggtaaggcactataagtcgac |
29228212 |
T |
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| Q |
247 |
atagagtataatttagagatatacccctaattggtatatactattacgaaggacaaatctcactctatttaagatgaaccctgcaagattcaaagt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29228213 |
atagagtataatttagagatatacccctaattggtatatactattacgaaggacaaatctcactctatttaagatgaaccctgcaagattcaaagt |
29228308 |
T |
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