View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_44 (Length: 346)
Name: NF11718_low_44
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 33 - 325
Target Start/End: Complemental strand, 3684324 - 3684036
Alignment:
| Q |
33 |
ttttctctccccgctaaccccaagaacacctaaaaaaggaccaaccaaatccatagcaaaatccacttccaccataaccatctagaatcctatgccaaac |
132 |
Q |
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| T |
3684324 |
ttttctctccccgctaaccccaagaacacctaaaaa-ggaccaaccgaatccatagcaaaatccacttccaccataaccatctagaatcatatgccaaac |
3684226 |
T |
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| Q |
133 |
cgtacgtagaggccaccccacacaaaacataaaaaagtgattagttgactcgaaagagacccctacatggcacaagaggcactagcaggatcagtgataa |
232 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3684225 |
cgta----gaggccaccccacacaaaacataaaaa-gtgattagttgactcggaagagacccctacatggcacaagaggcactagcaggatcggtgataa |
3684131 |
T |
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| Q |
233 |
ccctgcgcct--acaaattaactctagttgaaatcctatttaggagaaactgctaagaaaacacgtgagttttagaagagaaaatgaactataga |
325 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
3684130 |
ccctgcgccttaacaaattaactctagttgaaatcttatttaggagaaactgataagaaaatgcgtgagttttagaagagaaaatgaactataga |
3684036 |
T |
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