View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_49 (Length: 319)
Name: NF11718_low_49
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 42659348 - 42659475
Alignment:
| Q |
35 |
atatttgtagatgaatcaagaattgtaaaccttggaactttgaatgaccgatcaaggtagagtgtgaggagctagttatgtttggtcacaagacaaatgt |
134 |
Q |
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| T |
42659348 |
atatttgtagatgaatcaagaattgtaaaccttggaactttgaatgaccgatcaaggtagagtgtgaggagctcgttatgtttggtcaccagacaaatgt |
42659447 |
T |
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| Q |
135 |
agcgtgtaagtgcacatacaaatagaca |
162 |
Q |
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| T |
42659448 |
agcgtgtaagtgcacatacaaatagaca |
42659475 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 42659544 - 42659588
Alignment:
| Q |
258 |
tacaagtgaatacaaaagattttcaaccgcagtgaatccgttaat |
302 |
Q |
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| T |
42659544 |
tacaagtgaatacaaaagattttcaaccgcagtgaatccgttaat |
42659588 |
T |
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