View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11718_low_50 (Length: 316)

Name: NF11718_low_50
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11718_low_50
NF11718_low_50
[»] chr5 (19 HSPs)
chr5 (128-301)||(38010617-38010790)
chr5 (128-301)||(29989957-29990130)
chr5 (128-297)||(13478052-13478221)
chr5 (132-301)||(13015380-13015549)
chr5 (128-290)||(13086748-13086910)
chr5 (128-301)||(13421013-13421186)
chr5 (154-301)||(10292894-10293039)
chr5 (133-301)||(11607538-11607705)
chr5 (132-303)||(1826258-1826428)
chr5 (142-301)||(33858542-33858700)
chr5 (133-301)||(19357266-19357432)
chr5 (177-260)||(37881185-37881268)
chr5 (133-251)||(39570097-39570214)
chr5 (149-301)||(33271630-33271781)
chr5 (133-239)||(9827788-9827894)
chr5 (188-251)||(42148201-42148263)
chr5 (263-301)||(42331073-42331111)
chr5 (2-44)||(16727813-16727855)
chr5 (14-45)||(38921455-38921486)
[»] chr3 (25 HSPs)
chr3 (128-301)||(47186170-47186343)
chr3 (127-301)||(31187073-31187247)
chr3 (122-301)||(42664662-42664841)
chr3 (129-301)||(34029294-34029466)
chr3 (133-301)||(44380254-44380421)
chr3 (134-246)||(50934501-50934613)
chr3 (132-255)||(47426349-47426471)
chr3 (137-301)||(33509684-33509847)
chr3 (146-301)||(37742738-37742892)
chr3 (185-303)||(6022998-6023123)
chr3 (2-46)||(36164594-36164638)
chr3 (142-298)||(35094555-35094712)
chr3 (1-45)||(9099560-9099604)
chr3 (1-45)||(18939871-18939915)
chr3 (1-45)||(20997633-20997677)
chr3 (156-251)||(17466296-17466390)
chr3 (127-186)||(21963073-21963132)
chr3 (2-45)||(36163383-36163426)
chr3 (4-45)||(18912548-18912589)
chr3 (2-47)||(37465006-37465051)
chr3 (2-45)||(19801786-19801829)
chr3 (128-195)||(53440541-53440608)
chr3 (133-199)||(10018671-10018737)
chr3 (135-201)||(32319468-32319534)
chr3 (238-286)||(25859019-25859067)
[»] chr1 (23 HSPs)
chr1 (128-301)||(8809643-8809816)
chr1 (130-297)||(35998249-35998416)
chr1 (132-259)||(29119370-29119496)
chr1 (133-298)||(32676136-32676300)
chr1 (145-300)||(35534418-35534569)
chr1 (133-259)||(2569037-2569161)
chr1 (133-226)||(25161309-25161402)
chr1 (154-282)||(8462149-8462276)
chr1 (2-45)||(26529508-26529551)
chr1 (1-46)||(26530501-26530546)
chr1 (2-46)||(36575555-36575599)
chr1 (162-225)||(3688917-3688980)
chr1 (205-300)||(46435470-46435564)
chr1 (185-270)||(16679744-16679829)
chr1 (129-194)||(18056134-18056199)
chr1 (4-45)||(26531110-26531151)
chr1 (1-46)||(36573961-36574006)
chr1 (1-46)||(36574955-36575000)
chr1 (2-45)||(46150743-46150786)
chr1 (14-48)||(35063652-35063686)
chr1 (185-226)||(8555481-8555522)
chr1 (243-288)||(17431709-17431754)
chr1 (134-230)||(6223052-6223148)
[»] chr4 (23 HSPs)
chr4 (128-301)||(52012773-52012946)
chr4 (132-301)||(9799366-9799535)
chr4 (133-291)||(21260794-21260951)
chr4 (127-276)||(47943152-47943302)
chr4 (132-301)||(12473703-12473871)
chr4 (132-301)||(12528112-12528280)
chr4 (134-259)||(33249420-33249544)
chr4 (133-303)||(22343337-22343506)
chr4 (133-301)||(35869575-35869742)
chr4 (218-293)||(46720200-46720276)
chr4 (156-226)||(46719953-46720023)
chr4 (134-227)||(52910126-52910219)
chr4 (133-301)||(51811914-51812081)
chr4 (181-230)||(49999662-49999711)
chr4 (2-48)||(52189183-52189229)
chr4 (133-210)||(55590482-55590559)
chr4 (2-46)||(30829926-30829970)
chr4 (1-45)||(41774644-41774688)
chr4 (1-45)||(41780270-41780314)
chr4 (146-219)||(34829168-34829241)
chr4 (199-257)||(33174581-33174636)
chr4 (2-46)||(52190387-52190431)
chr4 (127-195)||(54277631-54277699)
[»] chr6 (15 HSPs)
chr6 (128-301)||(34245562-34245735)
chr6 (134-300)||(11113557-11113718)
chr6 (134-303)||(1211846-1212014)
chr6 (132-301)||(5403880-5404048)
chr6 (2-46)||(18193023-18193067)
chr6 (2-45)||(11020406-11020449)
chr6 (2-46)||(9448784-9448828)
chr6 (2-45)||(18191746-18191789)
chr6 (6-48)||(30758894-30758936)
chr6 (2-46)||(226120-226164)
chr6 (2-44)||(11020178-11020220)
chr6 (265-301)||(17330519-17330555)
chr6 (128-195)||(12800356-12800423)
chr6 (184-254)||(32644888-32644956)
chr6 (232-288)||(10126546-10126602)
[»] chr8 (16 HSPs)
chr8 (128-281)||(1514798-1514951)
chr8 (133-301)||(41179567-41179734)
chr8 (132-301)||(24337834-24338002)
chr8 (142-297)||(18168394-18168549)
chr8 (142-297)||(18631951-18632106)
chr8 (183-259)||(4708353-4708428)
chr8 (134-286)||(32825854-32826005)
chr8 (1-45)||(5005708-5005752)
chr8 (1-45)||(5014841-5014885)
chr8 (133-251)||(11254082-11254198)
chr8 (2-42)||(32564510-32564550)
chr8 (2-45)||(12887743-12887786)
chr8 (2-45)||(17863466-17863509)
chr8 (2-45)||(32565652-32565695)
chr8 (128-179)||(40530534-40530585)
chr8 (2-44)||(3872304-3872346)
[»] chr2 (24 HSPs)
chr2 (154-292)||(10163503-10163641)
chr2 (133-301)||(34392085-34392252)
chr2 (202-301)||(3668013-3668112)
chr2 (181-301)||(23863807-23863926)
chr2 (133-237)||(37357988-37358092)
chr2 (189-294)||(41095797-41095901)
chr2 (133-229)||(21603959-21604055)
chr2 (136-235)||(7381695-7381794)
chr2 (142-250)||(14565908-14566015)
chr2 (132-298)||(4775633-4775799)
chr2 (1-48)||(35306126-35306173)
chr2 (183-301)||(4779635-4779752)
chr2 (2-46)||(4753527-4753571)
chr2 (2-42)||(4755054-4755094)
chr2 (1-45)||(35298556-35298600)
chr2 (2-45)||(31620525-31620568)
chr2 (1-48)||(31622122-31622169)
chr2 (1-46)||(31621129-31621174)
chr2 (2-51)||(40894889-40894938)
chr2 (127-195)||(37811085-37811153)
chr2 (145-200)||(3668320-3668375)
chr2 (193-235)||(34903962-34904004)
chr2 (232-284)||(43154124-43154176)
chr2 (232-284)||(43159344-43159396)
[»] chr7 (13 HSPs)
chr7 (133-293)||(35341536-35341695)
chr7 (51-127)||(7163971-7164047)
chr7 (132-301)||(48250153-48250323)
chr7 (164-301)||(48072418-48072554)
chr7 (197-301)||(32694574-32694677)
chr7 (2-45)||(45291971-45292014)
chr7 (2-44)||(40601840-40601882)
chr7 (183-226)||(31306951-31306994)
chr7 (2-45)||(38516620-38516663)
chr7 (2-45)||(45296096-45296139)
chr7 (2-47)||(40600709-40600754)
chr7 (2-43)||(42537718-42537759)
chr7 (180-236)||(40856478-40856534)
[»] scaffold0229 (1 HSPs)
scaffold0229 (134-301)||(13009-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (133-282)||(34194-34341)
[»] scaffold0519 (1 HSPs)
scaffold0519 (133-251)||(11195-11311)
[»] scaffold0263 (1 HSPs)
scaffold0263 (163-235)||(23168-23240)
[»] scaffold0115 (2 HSPs)
scaffold0115 (2-45)||(6098-6141)
scaffold0115 (2-45)||(13838-13881)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 38010790 - 38010617
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38010790 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 38010691  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38010690 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 38010617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 29989957 - 29990130
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29989957 ggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgata 29990056  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29990057 tatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 29990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 128 - 297
Target Start/End: Complemental strand, 13478221 - 13478052
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  13478221 ggacaccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgata 13478122  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaca 297  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  13478121 tatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatcgtacaca 13478052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 132 - 301
Target Start/End: Original strand, 13015380 - 13015549
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||     
T  13015380 accacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatatata 13015479  T
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||    
T  13015480 ttttttaaagtatgtgccacatgtcacatcttaattggctaatgttatataacataatgatacgcaagtg 13015549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 128 - 290
Target Start/End: Original strand, 13086748 - 13086910
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  13086748 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgata 13086847  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatg 290  Q
    | | ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  13086848 tgtattttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatg 13086910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 13421186 - 13421013
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||| ||||||| ||||||||||| | |||||||||||||||||||  |||||||||||  || ||| ||||||||||||||||||||||||||| |||    
T  13421186 ggacatcacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaata 13421087  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  13421086 tatgttttttaaagtgtatgccacatgacacaccttacttgactaatgttatataacataatggtacacaagtg 13421013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 154 - 301
Target Start/End: Original strand, 10292894 - 10293039
Alignment:
Q  154 accaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacat 253  Q
    |||||||||||||||||||| | ||||||| |||||||| ||| ||||||| ||| ||| || |||||||||||| |  ||||||||| ||||||||| |    
T  10292894 accaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatattt--tttttaaagggtgtgccacgt 10292991  T
Q  254 ggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  10292992 ggcacaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 301
Target Start/End: Complemental strand, 11607705 - 11607538
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||||||||||||||| ||||||| |||||| ||||||| ||| | |||||||||| ||||||| |||||||||||||| |||||||||||||  |    
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatata-ct 11607607  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||| |||||||||  | ||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  11607606 tttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtg 11607538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 303
Target Start/End: Original strand, 1826258 - 1826428
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||| ||||||||| | ||||||| |||||| |||||   ||| |||||||| ||| ||||||| ||||||| || ||||||||||||||||||     
T  1826258 accacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatat- 1826356  T
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgat 303  Q
    ||||||||||| ||||||||||||||||  |||||||   |||| |||||| ||| ||| ||||||||||||    
T  1826357 ttttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtgat 1826428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 301
Target Start/End: Complemental strand, 33858700 - 33858542
Alignment:
Q  142 taccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag 241  Q
    ||||||||||| ||||||  |||||| ||||||| ||| | |||||||||| |||||||||||||||||||||| |||||||||||||  ||||||||||    
T  33858700 taccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-cttttttaaag 33858602  T
Q  242 tgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
     ||||||||| || ||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  33858601 ggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtg 33858542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 301
Target Start/End: Complemental strand, 19357432 - 19357266
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| |||||||| || ||||||| |||||| ||||| | ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||  |    
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata--t 19357335  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||||  ||| |||| || ||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  19357334 tttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtg 19357266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 37881185 - 37881268
Alignment:
Q  177 aataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacac 260  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||||| ||||    
T  37881185 aataagagtgtgccacataccaatgttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatggtacac 37881268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 39570214 - 39570097
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| || |||||| | | ||||| |||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||| |||||||||||||  |    
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatata-ct 39570116  T
Q  233 tttttaaagtgtgtgccac 251  Q
    ||||||||| |||||||||    
T  39570115 tttttaaagggtgtgccac 39570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 301
Target Start/End: Original strand, 33271630 - 33271781
Alignment:
Q  149 aagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgc 248  Q
    |||| ||||||| |||||| ||||| | ||| |||||||| ||  || ||||||||||| |||||||||||||||||||||| ||||||||||  || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatat-ttttttaaaggatgcgc 33271728  T
Q  249 cacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||| |||||||   |||||||  |||  |||||| ||| |||||||| |||||    
T  33271729 cacgtggcacattctaattgggcaatagtatataccattatggtacataagtg 33271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 9827788 - 9827894
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| ||||||| |||||| | ||    ||| ||||||| |||| ||||||| |||||||||||||  |||||||||||||| |    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatatatct 9827887  T
Q  233 tttttaa 239  Q
    |||||||    
T  9827888 tttttaa 9827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 42148201 - 42148263
Alignment:
Q  188 gccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccac 251  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatat-ttttttaaagggtgtaccac 42148263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 42331111 - 42331073
Alignment:
Q  263 taattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42331111 taattggctaatgttatataacataatggtacacaagtg 42331073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 16727855 - 16727813
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttact 44  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  16727855 tgatagcgaggtacactttcagcgacccaaatgagggtttact 16727813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 38921486 - 38921455
Alignment:
Q  14 acactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||||||||||||||||||||||||    
T  38921486 acactttcagggacccaaatgagggtttactc 38921455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 47186170 - 47186343
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47186170 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 47186269  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186270 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 47186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 127 - 301
Target Start/End: Complemental strand, 31187247 - 31187073
Alignment:
Q  127 tggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgat 226  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31187247 tggacaccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgat 31187148  T
Q  227 atatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31187147 atatattttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 31187073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 122 - 301
Target Start/End: Original strand, 42664662 - 42664841
Alignment:
Q  122 atttgtggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttat 221  Q
    |||| |||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||    
T  42664662 atttctggacaccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttat 42664761  T
Q  222 ttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  42664762 ttgatatatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 42664841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 129 - 301
Target Start/End: Complemental strand, 34029466 - 34029294
Alignment:
Q  129 gacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatat 228  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  34029466 gacaccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatat 34029367  T
Q  229 atgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  34029366 atgttttttaaagtgtgtgtcacatatcacaccttaattggctaatgttatataacataatggtacacaagtg 34029294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 301
Target Start/End: Original strand, 44380254 - 44380421
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| ||||||| ||||||  |||||| ||| | |||||| ||| || |||| ||||||||||||||||||||||||||||  |    
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatata-ct 44380352  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  44380353 tttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 50934501 - 50934613
Alignment:
Q  134 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 233  Q
    ||||||| ||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatatttt 50934600  T
Q  234 ttttaaagtgtgt 246  Q
     ||||||| ||||    
T  50934601 atttaaagggtgt 50934613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 47426349 - 47426471
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||| ||||||||||| ||||||  |||||| ||||| | ||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||     
T  47426349 accacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatat- 47426447  T
Q  232 ttttttaaagtgtgtgccacatgg 255  Q
    |||||||||| |||||||||||||    
T  47426448 ttttttaaagggtgtgccacatgg 47426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 33509684 - 33509847
Alignment:
Q  137 ttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttt 236  Q
    |||| ||||||||||| || |||  |||||| ||||||| ||| |||||||||||| ||||||| |||||||||| |||||||||||||| ||| |||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtat-ttttt 33509782  T
Q  237 taaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||  ||||||||||||||||   ||||| |  |||| |||||| ||| || |||||||||||    
T  33509783 taaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtg 33509847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 301
Target Start/End: Original strand, 37742738 - 37742892
Alignment:
Q  146 attaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtg 245  Q
    ||||||| ||||||| |||||| |||||   ||| ||||| |||||| |||||||||||| |||  ||||||||||||||||||| |||||||||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat-ttttttaaagagtg 37742836  T
Q  246 tgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||| |||||||   |||||||  |||| |||||| ||| ||| ||||||||||    
T  37742837 tgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtg 37742892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 6022998 - 6023123
Alignment:
Q  185 tgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgc-------cacatggcacaccttaattggctaatgtt 277  Q
    |||||||||||| ||||||| ||| ||| | ||||||||||||||| |||||||||| ||||||       ||| |||||||||||||||||| ||| ||    
T  6022998 tgtgccacatactaatgttattttgtaagtactttatttgatatatattttttaaagggtgtgccacgtggcacgtggcacaccttaattggccaatatt 6023097  T
Q  278 atataacataatggtacacaagtgat 303  Q
    |||||| || ||||||||||| ||||    
T  6023098 atataatattatggtacacaaatgat 6023123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 36164594 - 36164638
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36164594 tgatagcgagggacactttcagggacccaaatgagggtttactct 36164638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 298
Target Start/End: Original strand, 35094555 - 35094712
Alignment:
Q  142 taccattaagggaccaatgttatataacattgactaataa--gagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaa 239  Q
    ||||||||| | |||| || |||||| ||||||||||| |  |||| |||||| |||||||||||||||||||||  |||||||||||||| ||||||||    
T  35094555 taccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatat-ttttttaa 35094653  T
Q  240 agtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaa 298  Q
    ||  |||| ||| || ||||   |||||||  |||| || ||| ||| |||||||||||    
T  35094654 aggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaa 35094712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9099604 - 9099560
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  9099604 ttgatagcgaggtacactttaagggacccaaatgagggtttactc 9099560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18939871 - 18939915
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  18939871 ttgatagcgaagtacactttcagggacccaaatgagggtttactc 18939915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20997677 - 20997633
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  20997677 ttgatagcgaggtacattttcagggacccaaatgagggtttactc 20997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 17466296 - 17466390
Alignment:
Q  156 caatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccac 251  Q
    ||||| |||||| |||||   ||| |||||||| ||| || ||||||||||||||||||| |||| ||||||||| |||||||||| || ||||||    
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat-ttttttaaagggtatgccac 17466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 21963132 - 21963073
Alignment:
Q  127 tggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtg 186  Q
    |||||| ||||| | ||||||||||| | |||||||||||||||||||| ||||||||||    
T  21963132 tggacatcacttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 36163426 - 36163383
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  36163426 tgatagcgagggacactttcagggatccaaatgaaggtttactc 36163383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 18912589 - 18912548
Alignment:
Q  4 atagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  18912589 atagtgaggtacactttcagggacccaaatgagggtttactc 18912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 37465006 - 37465051
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactcta 47  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||    
T  37465006 tgatagcgagcaacactttcagggacccaaattagggtttactcta 37465051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 19801829 - 19801786
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  19801829 tgatagcgaggtacactttcagggaccggaatgagggtttactc 19801786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 53440541 - 53440608
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacata 195  Q
    ||||||||||||| |||||||  |  ||||||||||||||||| |||| ||| | |||||||||||||    
T  53440541 ggacaccacttgtgtaccattgggataccaatgttatataacactgaccaatgaaagtgtgccacata 53440608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 10018737 - 10018671
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaa 199  Q
    |||||||| ||||||||| | |||||||||||||| |||||   ||||| |||||||||| ||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  135 acttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatg 201  Q
    |||||| ||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| ||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 25859019 - 25859067
Alignment:
Q  238 aaagtgtgtgccacatggcacaccttaattggctaatgttatataacat 286  Q
    |||| |||||||||||| |||||  |||||||| |||||||||||||||    
T  25859019 aaagggtgtgccacatgacacactctaattggccaatgttatataacat 25859067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 8809816 - 8809643
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  8809816 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgata 8809717  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8809716 tatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 8809643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 130 - 297
Target Start/End: Original strand, 35998249 - 35998416
Alignment:
Q  130 acaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatata 229  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| || ||||||| |||||    
T  35998249 acaccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatata 35998348  T
Q  230 tgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaca 297  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35998349 tgttttttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacataatggtacaca 35998416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 29119496 - 29119370
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| || || |||||||||||| ||||||||||||||||||     
T  29119496 accacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatat- 29119398  T
Q  232 ttttttaaagtgtgtgccacatggcaca 259  Q
    |||||||||| |||||||||||||||||    
T  29119397 ttttttaaagggtgtgccacatggcaca 29119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 298
Target Start/End: Original strand, 32676136 - 32676300
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| ||||||| |||||| ||||| | ||| ||| ||  |||| ||||||||||||||||||||||||||||||||||||| |    
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat-t 32676234  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaa 298  Q
    |||||||||  ||||||||||||||||   |||||||  |||| |||||| ||| || ||||||||    
T  32676235 tttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaa 32676300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 300
Target Start/End: Original strand, 35534418 - 35534569
Alignment:
Q  145 cattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgt 244  Q
    |||||||  ||||||||||||||||||||   | | |||||||||||||||| ||||| | ||||||| || ||||||| ||||    ||||||||| ||    
T  35534418 cattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttatttaatat----tttttaaagggt 35534513  T
Q  245 gtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagt 300  Q
    |||||||||| ||||||||||||||| ||| ||||||||||| ||||| |||||||    
T  35534514 gtgccacatgacacaccttaattggccaatattatataacattatggttcacaagt 35534569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 2569037 - 2569161
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| ||||||| |||||| ||||  | ||| |||||||||||| |||||||||||| |||  ||||||||||||||||||  |    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata--t 2569134  T
Q  233 tttttaaagtgtgtgccacatggcaca 259  Q
    ||||||||| ||||||||  |||||||    
T  2569135 tttttaaagggtgtgccatgtggcaca 2569161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 25161309 - 25161402
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgat 226  Q
    |||||||| ||||||||| |   ||||| |||||| ||||||| ||| | |||||||||| || ||||||||||||||||||| ||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 282
Target Start/End: Original strand, 8462149 - 8462276
Alignment:
Q  154 accaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacat 253  Q
    ||||||| |||||| ||||||  ||| | |||||||||| ||||||||||| |||||||||| ||||||| |||||  |||||||||| | ||||||| |    
T  8462149 accaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatata-cttttttaaagggcgtgccacgt 8462247  T
Q  254 ggcacaccttaattggctaatgttatata 282  Q
    | ||||  ||||||||  |||| ||||||    
T  8462248 gacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26529551 - 26529508
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  26529551 tgatagcgaggtacactttcagggacccaaatgagggtttactc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26530546 - 26530501
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||    
T  26530546 ttgatagcgaggtacactttcagggacccaaatgaaggtttactct 26530501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 36575555 - 36575599
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||    
T  36575555 tgatagcgaggtacactttcagggactcaaatgagggtttactct 36575599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
Q  162 tatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttga 225  Q
    |||||| ||||||| ||| ||||||| | || |||||||||||||||||||||| |||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 46435564 - 46435470
Alignment:
Q  205 ctttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagt 300  Q
    ||||||| |||||||||||||||||| ||||| |||| ||||| |||||| ||||   |||||||  |||| |||||| ||| |||||||||||||    
T  46435564 ctttatagatgctttatttgatatatattttt-aaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagt 46435470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 16679744 - 16679829
Alignment:
Q  185 tgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggc 270  Q
    ||||||| |||| ||| ||  ||||||| ||||||||||||||||| |||||||||| ||||| ||| || |||| | ||||||||    
T  16679744 tgtgccatatacaaatattcttttataagtgctttatttgatatatattttttaaagggtgtgtcacgtgacacatcctaattggc 16679829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 18056199 - 18056134
Alignment:
Q  129 gacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacat 194  Q
    |||||||||||| |||||||||   ||||||||||||||| |||||| ||| | ||||||||||||    
T  18056199 gacaccacttgtgtaccattaaactaccaatgttatataatattgaccaatgaaagtgtgccacat 18056134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 26531110 - 26531151
Alignment:
Q  4 atagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  26531110 atagcgaggtacactttcagggaccaaaatgagggtttactc 26531151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36574006 - 36573961
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||    
T  36574006 ttgatagcgaggtacactttcagggacctaaatgagtgtttactct 36573961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36575000 - 36574955
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||    
T  36575000 ttgatagcgaggtacactttcagggacccaaatgaaagtttactct 36574955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 46150786 - 46150743
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||||||||||||||| || ||| |||||||||||||    
T  46150786 tgatagcgagggacactttcaggaactcaagtgagggtttactc 46150743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 35063652 - 35063686
Alignment:
Q  14 acactttcagggacccaaatgagggtttactctaa 48  Q
    |||||||||| ||||||||||||||||||||||||    
T  35063652 acactttcagagacccaaatgagggtttactctaa 35063686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 8555481 - 8555522
Alignment:
Q  185 tgtgccacataccaatgttactttataaatgctttatttgat 226  Q
    |||| ||||||||||||||| |||||||||| ||||||||||    
T  8555481 tgtgtcacataccaatgttattttataaatgttttatttgat 8555522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 17431709 - 17431754
Alignment:
Q  243 gtgtgccacatggcacaccttaattggctaatgttatataacataa 288  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||    
T  17431709 gtgtgccacatggcacaccctgattggacaatgttatataacataa 17431754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 6223052 - 6223148
Alignment:
Q  134 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatat 230  Q
    ||||||| ||||||||| | | |||||||||||| ||||||  ||| |  ||||| || ||| |||||||| ||||||| |  ||||||||||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatat 6223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 52012773 - 52012946
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  52012773 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgata 52012872  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  52012873 tatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 52012946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 132 - 301
Target Start/End: Complemental strand, 9799535 - 9799366
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||||||||||||||| |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  9799535 accacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatg 9799436  T
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  9799435 ttttttaaagtgtgtgtcacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 9799366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 133 - 291
Target Start/End: Original strand, 21260794 - 21260951
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||| ||||||||||||| ||||||| |||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||| |||||||||||||| |    
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-t 21260892  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatgg 291  Q
    ||||||||| |||||||||||||||||   ||||||| |||||||||||| ||| ||||    
T  21260893 tttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatgg 21260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 47943152 - 47943302
Alignment:
Q  127 tggacaccacttgtataccattaagggaccaatgttatataacatt-gactaataagagtgtgccacataccaatgttactttataaatgctttatttga 225  Q
    |||||||||||||| |||||||||   ||||||||||||||| ||| ||| ||||| | |||||||||||||||| ||| |||||||||  |||||||||    
T  47943152 tggacaccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttga 47943251  T
Q  226 tatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgt 276  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  47943252 tatatgttttttaaaatgtgtgccacatgtcacaccttaattagctaatgt 47943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 132 - 301
Target Start/End: Original strand, 12473703 - 12473871
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||||||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||     
T  12473703 accacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat- 12473801  T
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||||| ||||| |||||| ||||   ||||||   |||| |||||| ||| ||||||||||||||    
T  12473802 ttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtg 12473871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 132 - 301
Target Start/End: Original strand, 12528112 - 12528280
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||||||||||||||| ||||||| |||||| ||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||     
T  12528112 accacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat- 12528210  T
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||||| ||||| |||||| ||||   ||||||   |||| |||||| ||| ||||||||||||||    
T  12528211 ttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtg 12528280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 259
Target Start/End: Complemental strand, 33249544 - 33249420
Alignment:
Q  134 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 233  Q
    ||||||| ||||||||||| || |||| ||||||  |||| | ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||  |    
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatat-at 33249446  T
Q  234 ttttaaagtgtgtgccacatggcaca 259  Q
    |||||||| |||||||||||||||||    
T  33249445 ttttaaagggtgtgccacatggcaca 33249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 303
Target Start/End: Original strand, 22343337 - 22343506
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| | ||||| |||||| ||||||| ||| |||||||| ||  || |||||||||||||||||||||||||||||||||| |    
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat-t 22343435  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgat 303  Q
     ||||||||  ||||||||||| ||||   ||||||   |||| |||||| ||| |||||||||| |||||    
T  22343436 attttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacacaggtgat 22343506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 301
Target Start/End: Complemental strand, 35869742 - 35869575
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||| ||| | | |||||||| ||||||||||||| |||||||| |||||||||||||  |    
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata-ct 35869644  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||| ||||||||| || ||||   ||||||   |||| |||||| ||| |||||| |||||||    
T  35869643 tttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 46720200 - 46720276
Alignment:
Q  218 ttatttgatatatgtttt-ttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggta 293  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  46720200 ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaattgactaatgttatataacataatggta 46720276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 46719953 - 46720023
Alignment:
Q  156 caatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgat 226  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  46719953 caatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  134 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||| |||||| | || |||||||||||||| ||||| | ||| | |||||||||| ||||||| ||||||||||||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 301
Target Start/End: Original strand, 51811914 - 51812081
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    ||||| || ||||||||||| | ||| | ||||||  |||| | ||| ||||| |||||| |||||||||||||||||||||  ||| |||||||||| |    
T  51811914 ccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatat-t 51812012  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||| ||||||||  || ||||   ||||||| ||||| |||||| ||| ||| || |||||||    
T  51812013 tttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtg 51812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 49999711 - 49999662
Alignment:
Q  181 agagtgtgccacataccaatgttactttataaatgctttatttgatatat 230  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  49999711 agagtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 52189229 - 52189183
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactctaa 48  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||    
T  52189229 tgatagcgaggtgcactttcagggacccaaatgagggtttactctaa 52189183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 55590482 - 55590559
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttat 210  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||  ||| | |||||| ||| |||||||||||||||||    
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 30829970 - 30829926
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  30829970 tgatagcgagcaacactttcagggacccaaatgagggtttactct 30829926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41774688 - 41774644
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||    
T  41774688 ttgatagcgaggtacactttcagggacccaaatgagagtttactc 41774644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41780270 - 41780314
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  41780270 ttgatagcgaggtacactttcagagacccaaatgagggtttactc 41780314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 34829241 - 34829168
Alignment:
Q  146 attaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgcttt 219  Q
    ||||||| ||||||| |||||| || || | ||| | |||||| ||| ||||||||||||||||||||||||||    
T  34829241 attaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 33174581 - 33174636
Alignment:
Q  199 atgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggca 257  Q
    ||||||||||||||||| |||||||||||||   ||||||||| ||||||||| |||||    
T  33174581 atgttactttataaatgttttatttgatata---tttttaaagggtgtgccacgtggca 33174636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 52190387 - 52190431
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    ||||||||||   ||||||||||||||||||||||||||||||||    
T  52190387 tgatagcgagatgcactttcagggacccaaatgagggtttactct 52190431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 54277699 - 54277631
Alignment:
Q  127 tggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacata 195  Q
    |||||||||||||| |||||||  |  ||||||||||||||||||||   ||| | |||||||||||||    
T  54277699 tggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 54277631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 34245562 - 34245735
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| |  ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  34245562 ggacaccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgata 34245661  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  34245662 tatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataatataatggtacacaagtg 34245735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 134 - 300
Target Start/End: Original strand, 11113557 - 11113718
Alignment:
Q  134 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 233  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||     ||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat-----tt 11113651  T
Q  234 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagt 300  Q
    ||||||||  || |||||||||||||||||||||| | ||||||||||| ||| |||||||| ||||    
T  11113652 ttttaaaggatgcgccacatggcacaccttaattgaccaatgttatataccattatggtacataagt 11113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 303
Target Start/End: Complemental strand, 1212014 - 1211846
Alignment:
Q  134 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 233  Q
    ||||||| ||||||||||| ||||||| |||||| ||||| ||||| || ||||||||| |  ||||||||||||||  |||||||||||||||||| ||    
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-tt 1211916  T
Q  234 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgat 303  Q
    |||||||| ||||||||| |||||||   |||| ||  |||| |||||| ||| ||||||||||||||||    
T  1211915 ttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgat 1211846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 301
Target Start/End: Complemental strand, 5404048 - 5403880
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||| ||||||||||| || |||| ||||||  ||||   | | ||||| |||||| |||||||||||||||||| ||| ||||||||||||||     
T  5404048 accacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatat- 5403950  T
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||||| | ||  |||||| ||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  5403949 ttttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtg 5403880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 18193023 - 18193067
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18193023 tgatagcgagggacactttcagggacccaaatgagggtttactct 18193067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 11020406 - 11020449
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11020406 tgatagcgagggacactttcagggacccaaatgagggtttactc 11020449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 9448784 - 9448828
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  9448784 tgatagcgaggtacactttcagggacccaaatgagggtttactct 9448828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 18191789 - 18191746
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  18191789 tgatagcgtgggacactttcagggacccaaatgagggtttactc 18191746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 30758894 - 30758936
Alignment:
Q  6 agcgagggacactttcagggacccaaatgagggtttactctaa 48  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  30758894 agcgagggacactttcaaggacccaaatgagggtttactctaa 30758936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 226164 - 226120
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  226164 tgatagcgaggcacactttcaaggacccaaatgagggtttactct 226120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 11020220 - 11020178
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttact 44  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  11020220 tgatagtgagggacactttcagggacccaaatgagagtttact 11020178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 17330555 - 17330519
Alignment:
Q  265 attggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||||| ||||||||||||||||||||||||||    
T  17330555 attggctaatattatataacataatggtacacaagtg 17330519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 12800423 - 12800356
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacata 195  Q
    ||||||||||||| |||||||  |  |||||||||||||||||||| ||||| |  ||||||||||||    
T  12800423 ggacaccacttgtgtaccattgggataccaatgttatataacattggctaatgaaggtgtgccacata 12800356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 32644956 - 32644888
Alignment:
Q  184 gtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatg 254  Q
    ||||| ||| ||| |||||||||||| |||| ||||||||| ||||| |||||||||| ||||||||||||    
T  32644956 gtgtgtcacctacaaatgttacttta-aaatactttatttgttatat-ttttttaaagggtgtgccacatg 32644888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 10126546 - 10126602
Alignment:
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataa 288  Q
    ||||| |||| ||||||||| ||||||||| | |||||  |||||||||||||||||    
T  10126546 tttttaaaagggtgtgccacgtggcacacccttattggacaatgttatataacataa 10126602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 128 - 281
Target Start/End: Original strand, 1514798 - 1514951
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgata 227  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  1514798 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgata 1514897  T
Q  228 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatat 281  Q
    ||| ||||||||| ||||| ||| ||| |||||||||||||| |||||||||||    
T  1514898 tatattttttaaaatgtgtaccatatgtcacaccttaattggttaatgttatat 1514951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 301
Target Start/End: Complemental strand, 41179734 - 41179567
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| ||||||| |||||| ||||| | ||| | |||||| ||| |||| ||||||||||||||||| ||||||| |||||| |    
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat-t 41179636  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||| |  ||||||||||||||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  41179635 tttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 301
Target Start/End: Complemental strand, 24338002 - 24337834
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||| ||| ||||||| | ||||| |||||| ||| |   ||| |||||||||||  |||||||||||||||||| ||||||||||||||||||     
T  24338002 accacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatat- 24337904  T
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
     ||||||||| ||||||||||| |||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  24337903 atttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtg 24337834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 297
Target Start/End: Original strand, 18168394 - 18168549
Alignment:
Q  142 taccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag 241  Q
    ||||||||||| ||||||| |||||| ||||||  ||| ||||||| |||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  18168394 taccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaag 18168493  T
Q  242 tgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaca 297  Q
      |||||||| || ||||   ||||| | ||||  |||||| ||| ||||||||||    
T  18168494 gatgtgccacgtgacacaatctaattaggtaataatatataccattatggtacaca 18168549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 297
Target Start/End: Original strand, 18631951 - 18632106
Alignment:
Q  142 taccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag 241  Q
    ||||||||||| ||||||| |||||| ||||||  ||| ||||||| |||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  18631951 taccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaag 18632050  T
Q  242 tgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaca 297  Q
      |||||||| || ||||   ||||| | ||||  |||||| ||| ||||||||||    
T  18632051 gatgtgccacgtgacacaatctaattaggtaataatatataccattatggtacaca 18632106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 4708428 - 4708353
Alignment:
Q  183 agtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcaca 259  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||| |||||||    
T  4708428 agtgtgtcacctaccaatgttactttataaatgttttatttgatatat-atttttaaagggtgtgccacgtggcaca 4708353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 286
Target Start/End: Complemental strand, 32826005 - 32825854
Alignment:
Q  134 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 233  Q
    ||||||| ||||||||| | | ||||||| |||| ||||| | ||| ||||| || |||||| |||||||| ||||||  || |||||||||||||| ||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatat-tt 32825907  T
Q  234 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacat 286  Q
    ||| ||||  |||| |||||| |||| |||||||||| |||  ||||||||||    
T  32825906 tttaaaaggttgtgtcacatgacacatcttaattggccaattatatataacat 32825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5005752 - 5005708
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5005752 ttgatagcgaggtacactttcagggacccaaatgagggtttactc 5005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5014841 - 5014885
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5014841 ttgatagcgaggtacactttcagggacccaaatgagggtttactc 5014885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 11254198 - 11254082
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| |||||||||   ||||||| |||||| ||||||| | ||  ||| | |||| |||||||||||||||||||||| |||||||||||||       
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-ca 11254101  T
Q  233 tttttaaagtgtgtgccac 251  Q
    ||||||||| |||||||||    
T  11254100 tttttaaagggtgtgccac 11254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 32564550 - 32564510
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggttta 42  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  32564550 tgatagcgagggacactttcaaggacccaaatgagggttta 32564510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 12887743 - 12887786
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  12887743 tgatcgcgaggtacactttcagggacccaaatgagggtttactc 12887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 17863509 - 17863466
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  17863509 tgatagcgaggtgcactttcagggacccaaatgagggtttactc 17863466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 32565652 - 32565695
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  32565652 tgatagcgagggacactttcagggacctaaacgagggtttactc 32565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 40530585 - 40530534
Alignment:
Q  128 ggacaccacttgtataccattaagggaccaatgttatataacattgactaat 179  Q
    ||||||||||||| || |||| ||  ||||||||||||||||||||||||||    
T  40530585 ggacaccacttgtgtaacattgagataccaatgttatataacattgactaat 40530534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 3872304 - 3872346
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttact 44  Q
    |||||||||||  |||||||||||||||||| |||||||||||    
T  3872304 tgatagcgaggtgcactttcagggacccaaacgagggtttact 3872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 154 - 292
Target Start/End: Original strand, 10163503 - 10163641
Alignment:
Q  154 accaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacat 253  Q
    |||||||||||||||||||||| ||||| | ||||||||||||  || |||||||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  10163503 accaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctacat 10163602  T
Q  254 ggcacaccttaattggctaatgttatataacataatggt 292  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  10163603 ggcataccttaattgactaatgttatataacataatggt 10163641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 133 - 301
Target Start/End: Complemental strand, 34392252 - 34392085
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||| ||| ||||||| |||||| ||||| | ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat-t 34392154  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||| |||||||||||||||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  34392153 tttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtg 34392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 3668112 - 3668013
Alignment:
Q  202 ttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  3668112 ttactttataagtgctttattttatatatgttttttaaagtgagtgccacatggcacatcttaattggctaatattatataatataatggtacacaagtg 3668013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 181 - 301
Target Start/End: Complemental strand, 23863926 - 23863807
Alignment:
Q  181 agagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttata 280  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||   |||||||  |||| ||||    
T  23863926 agagtgtgccacctaccaatgttactttataaatgctttatttgatatat-atttttaaagggtgtgccacatggcacattctaattggacaatgatata 23863828  T
Q  281 taacataatggtacacaagtg 301  Q
    || ||| ||||||||| ||||    
T  23863827 tatcattatggtacactagtg 23863807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 37358092 - 37357988
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| || |||||||| ||||||| |||||| ||||||||||| |||||||| ||| || ||||||||||||||||||||||||||| |||| | |    
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatattttt 37357993  T
Q  233 ttttt 237  Q
    |||||    
T  37357992 ttttt 37357988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 41095901 - 41095797
Alignment:
Q  189 ccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataa 288  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||  || |||||||||||||||| ||| |||| |||| |||||| ||| |    
T  41095901 ccacctaccaatgttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacaccctaaatggccaatggtatataccatta 41095803  T
Q  289 tggtac 294  Q
    ||||||    
T  41095802 tggtac 41095797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatata 229  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||| ||| | |||||  ||| |||||||||||||||||||||| |||||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 7381695 - 7381794
Alignment:
Q  136 cttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtttt 235  Q
    ||||| ||||||||||| ||||||| ||||||  |||| | ||| |||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatatatttttt 7381794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 14566015 - 14565908
Alignment:
Q  142 taccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag 241  Q
    ||||| ||||| |||||||||||||| ||||||  ||  ||||||||| |||||||||| ||| ||||||| | ||| |||||||||| |||||||||||    
T  14566015 taccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatata-gttttttaaag 14565917  T
Q  242 tgtgtgcca 250  Q
      |||||||    
T  14565916 gatgtgcca 14565908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 298
Target Start/End: Original strand, 4775633 - 4775799
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaat-gctttatttgatatat 230  Q
    ||||||| | ||||||||||  ||||||| ||||||  |||| | ||| ||| |||  ||  ||||||| ||||||||| ||| | ||||||| ||||||    
T  4775633 accacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatat 4775732  T
Q  231 gttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaa 298  Q
     ||||||||||  ||||||||||||||||  ||||||||  |||| |||||| ||| |||||||||||    
T  4775733 -ttttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaa 4775799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35306126 - 35306173
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactctaa 48  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  35306126 ttgatagcgaggtacactttcagggacctaaatgagggtttactctaa 35306173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 301
Target Start/End: Original strand, 4779635 - 4779752
Alignment:
Q  183 agtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatata 282  Q
    |||||||| | || |||||||||||||||||| ||||||||||||||| ||||||||||  |||| ||| || ||||   |||||||  |||| ||||||    
T  4779635 agtgtgccgcctaacaatgttactttataaatactttatttgatatat-ttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatata 4779733  T
Q  283 acataatggtacacaagtg 301  Q
     ||| ||| ||||||||||    
T  4779734 ccattatgatacacaagtg 4779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 4753571 - 4753527
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  4753571 tgatagcgagagacactttcagggacccaaacgagggtttactct 4753527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 4755054 - 4755094
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggttta 42  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4755054 tgatagcgagggacactttcagagacccaaatgagggttta 4755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35298600 - 35298556
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||    
T  35298600 ttgatagcgaggtacactttcaggaacccaaatgagggtttactc 35298556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 31620568 - 31620525
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  31620568 tgatagcgaggtacactttcagggactcaaatgagggtttactc 31620525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31622122 - 31622169
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactctaa 48  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  31622122 ttgataacgaggtacactttcagggacccaaataagggtttactctaa 31622169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31621129 - 31621174
Alignment:
Q  1 ttgatagcgagggacactttcagggacccaaatgagggtttactct 46  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||||    
T  31621129 ttgatagcgaggtacacttttagggacccaaatgaaggtttactct 31621174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 40894889 - 40894938
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactctaagaa 51  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||| |||||    
T  40894889 tgatagcgaggtacacttttagggatccaaatgagggtttactcaaagaa 40894938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 37811085 - 37811153
Alignment:
Q  127 tggacaccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacata 195  Q
    |||||||||||||| |||||||  |  |||||||||||||||||||| | ||| | |||||||||||||    
T  37811085 tggacaccacttgtgtaccattgggataccaatgttatataacattggccaatgaaagtgtgccacata 37811153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 3668375 - 3668320
Alignment:
Q  145 cattaagggaccaatgttatataacattgactaataagagtgtgccacataccaat 200  Q
    |||||||| ||||||||||||||||||||| |  |||||||||| |||||| ||||    
T  3668375 cattaaggtaccaatgttatataacattgattggtaagagtgtgtcacatatcaat 3668320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 34903962 - 34904004
Alignment:
Q  193 ataccaatgttactttataaatgctttatttgatatatgtttt 235  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||    
T  34903962 atactaatgttattttataaatgctttatttgatatatttttt 34904004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 43154176 - 43154124
Alignment:
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataac 284  Q
    |||||||||| ||||||||| ||||||||| | |||||  |||||||||||||    
T  43154176 ttttttaaagggtgtgccacgtggcacaccctgattggacaatgttatataac 43154124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 43159344 - 43159396
Alignment:
Q  232 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataac 284  Q
    |||||||||| ||||||||| ||||||||| | |||||  |||||||||||||    
T  43159344 ttttttaaagggtgtgccacgtggcacaccctgattggacaatgttatataac 43159396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 293
Target Start/End: Original strand, 35341536 - 35341695
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||| ||| | |||||||||| |||||||||||||||||||||| |||||||||||||  |    
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ct 35341634  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggta 293  Q
    ||||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| ||||||    
T  35341635 tttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggta 35341695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 7163971 - 7164047
Alignment:
Q  51 aacaccgtatgataaatagtgagatcatagatagtcaacacatggttgtatattataggagacacgaacacatttgt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  7163971 aacaccgtatgataaatagtgagatcatagatagtcaacacatagctgtatattattggagacacgaacacatttgt 7164047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 301
Target Start/End: Original strand, 48250153 - 48250323
Alignment:
Q  132 accacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatg 231  Q
    ||||||||| ||||||||||| ||||||| |||||| |||||   ||| |||||||||||| |||||||||||||||||| |||||||||||||||| |     
T  48250153 accacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat-tt 48250251  T
Q  232 ttttttaaagtgtgtgccaca--tggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||||| || ||| |||  || ||||   |||||||  |||| |||||| ||| ||||||||||||||    
T  48250252 ttttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtg 48250323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 48072418 - 48072554
Alignment:
Q  164 tataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacacctt 263  Q
    |||| ||||||  ||| ||||||||||||||  |||||||| |||||||||  |||||||||| ||| |||||||||| ||||||||| |||||||   |    
T  48072418 tataccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat-ttttttaaagggtgtgccacgtggcacattct 48072516  T
Q  264 aattggctaatgttatataacataatggtacacaagtg 301  Q
    ||||||  |||| |||||| ||| ||||||||||||||    
T  48072517 aattgggcaatggtatataccattatggtacacaagtg 48072554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 32694677 - 32694574
Alignment:
Q  197 caatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacac 296  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| || ||||   ||||| |  |||| |||||| ||| || ||||||    
T  32694677 caatgttactttataaattctttatttgatatat-ttttttaaagggtgtgccacgtgacacattctaattaggcaatggtatataccattatagtacac 32694579  T
Q  297 aagtg 301  Q
    |||||    
T  32694578 aagtg 32694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 45291971 - 45292014
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  45291971 tgatagcgaggtacactttcagggacccaaatgagggtttactc 45292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 40601840 - 40601882
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttact 44  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  40601840 tgatagcgaggcacactttcagggacccaaatgagggtttact 40601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 31306994 - 31306951
Alignment:
Q  183 agtgtgccacataccaatgttactttataaatgctttatttgat 226  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  31306994 agtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 38516663 - 38516620
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  38516663 tgatagcgatgtacactttcagggacccaaatgagggtttactc 38516620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 45296096 - 45296139
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  45296096 tgatagcgaggtacacttttagggacccaaatgagggtttactc 45296139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 40600754 - 40600709
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactcta 47  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||    
T  40600754 tgatagagaggcacattttcagggacccaaatgagggtttactcta 40600709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 42537759 - 42537718
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttac 43  Q
    ||||||||||  |||||||||||||||||| |||||||||||    
T  42537759 tgatagcgagcaacactttcagggacccaactgagggtttac 42537718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 40856478 - 40856534
Alignment:
Q  180 aagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttt 236  Q
    ||||||||| ||| ||||||||||| |||||| ||| |||||||||| ||| |||||    
T  40856478 aagagtgtgtcacctaccaatgttattttatagatgttttatttgatgtattttttt 40856534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 301
Target Start/End: Complemental strand, 13176 - 13009
Alignment:
Q  134 cacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtt 233  Q
    ||||||| ||||||||||| ||||||| |||||| ||||| ||||| || ||||||||| |  ||||||||||||||  |||||||||||||||||| ||    
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-tt 13078  T
Q  234 ttttaaagtg-tgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 301  Q
    |||||||| | |||||||| |||||||   |||| ||  |||| |||||| ||| ||||||||||||||    
T  13077 ttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 13009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 34194 - 34341
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| ||||||||||| ||||||| ||||||  |||| | ||| |||||||||||| ||||||| |||||||||||||  |||||||||||||  |    
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata--t 34291  T
Q  233 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatata 282  Q
    ||||||||| ||||| ||| || ||||   ||||||| ||||||||||||    
T  34292 tttttaaagggtgtgtcacgtgacacattctaattggataatgttatata 34341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 11195 - 11311
Alignment:
Q  133 ccacttgtataccattaagggaccaatgttatataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgt 232  Q
    |||||||| |||||||||   ||||||| |||||| ||||||| | ||  ||| | |||| |||||||||||||||||||||| |||||||||||||       
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-ca 11292  T
Q  233 tttttaaagtgtgtgccac 251  Q
    ||||||||| |||||||||    
T  11293 tttttaaagggtgtgccac 11311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 23240 - 23168
Alignment:
Q  163 atataacattgactaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtttt 235  Q
    ||||| ||||| | ||| |||||||||||| ||||||| |||||||||||||  |||||||||||||| ||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatatttttt 23168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 6098 - 6141
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  6098 tgatagcgaggtacactttcagggactcaaatgagggtttactc 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 13838 - 13881
Alignment:
Q  2 tgatagcgagggacactttcagggacccaaatgagggtttactc 45  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  13838 tgatagcgaggtacactttcagggactcaaatgagggtttactc 13881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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