View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11718_low_55 (Length: 279)
Name: NF11718_low_55
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_55 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 24563559 - 24563823
Alignment:
| Q |
15 |
cataggagatatcttccaaagcttttgagataacagtgtgatccgaaccaattccaagaaggttcatagcttgaatcagagcaaatgtattggaaaagcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24563559 |
cataggagatatcttccaaagcttttgagataacagtgtgatccgaaccaattccaagaaggttcataacttgaatcagagcaaatgtattggaaaagcc |
24563658 |
T |
|
| Q |
115 |
cttagcagccataccacgatcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaat |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24563659 |
cttagtagccataccacgatcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaat |
24563758 |
T |
|
| Q |
215 |
ctcaaactacatccgtaattaagaaaccaaaccaacaatggtttagataagttcgcaactgcttt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24563759 |
ctcaaactacatccgtaattaagaaaccaaaccaacaatggtttagataagttcgcaactgcttt |
24563823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 9798586 - 9798720
Alignment:
| Q |
134 |
tcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaat |
233 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||| | || |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9798586 |
tcaactccttatctttagttgagcatatcttcttggattccctccatttgtctgctctaataatagtgtatcattaaaaatctcgaactacatccgtaat |
9798685 |
T |
|
| Q |
234 |
taagaaaccaaaccaacaatggtttagataagttc |
268 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
9798686 |
taagaaaccaaatcaacaatggtttagataagttc |
9798720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 151 - 268
Target Start/End: Complemental strand, 45536060 - 45535942
Alignment:
| Q |
151 |
gttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaaccaaaccaac |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| || | |||||||||||||| ||||||||||||||| |
|
|
| T |
45536060 |
gttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaattcagaaaccaaaccaac |
45535961 |
T |
|
| Q |
251 |
-aatggtttagataagttc |
268 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45535960 |
aaatggtttagataagttc |
45535942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 44337428 - 44337525
Alignment:
| Q |
40 |
tgagataacagtgtgatccgaaccaattccaagaaggttcatagcttgaatcagagcaaatgtattggaaaagcccttagcagccataccacgatcaa |
137 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44337428 |
tgagatagcagtgtgatccgaaccaaattcaagaaggtgcgtaacttgaatcagagcaaatgtattggaaaagcccttagtagccataccacgatcaa |
44337525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 45536235 - 45536177
Alignment:
| Q |
79 |
catagcttgaatcagagcaaatgtattggaaaagcccttagcagccataccacgatcaa |
137 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
45536235 |
cataacttgaatcagagcaaatgtattggaaaagcccttggtagctataccacgatcaa |
45536177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 44337629 - 44337754
Alignment:
| Q |
143 |
tatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaag-aaac |
241 |
Q |
| |
|
|||||| |||||| |||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| | | || || || |||||| || |||| |
|
|
| T |
44337629 |
tatcttcagttgaacatagtttcttggattccctcacttttc-tgttctaataatagtgtatcattaaattttttgaaatatatttgtaattcagaaaac |
44337727 |
T |
|
| Q |
242 |
caaaccaacaatggtttagataagttc |
268 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
44337728 |
caaactaacaatggtttagataagttc |
44337754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 19190303 - 19190201
Alignment:
| Q |
151 |
gttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaaccaaaccaac |
250 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| ||||||| ||||||| |||||||||| | || || ||||| | ||||| |||||| |||||||| |
|
|
| T |
19190303 |
gttgagcatagcttcttggattccctcactttttctgttctaataatagtacatcattaaaattttcgaaatacattcataattcagaaactaaaccaac |
19190204 |
T |
|
| Q |
251 |
aat |
253 |
Q |
| |
|
||| |
|
|
| T |
19190203 |
aat |
19190201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University