View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_62 (Length: 241)
Name: NF11718_low_62
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38398527 - 38398755
Alignment:
| Q |
1 |
tgctgtttgtgatccattctcagtaaaaatttcttgatacctcacattttcagcatttttcaattcttccaacatttcatcgccaattaccgttaattcc |
100 |
Q |
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| T |
38398527 |
tgctgtttgtgatccattctcagtaaaaacttcttgatacctcacattttcagcatttttcaattcttccaacatttcatcgccaattaccgttaattcc |
38398626 |
T |
|
| Q |
101 |
tccaattctactatgttttccttagcaacaagacggtaaacaactaggttgatcttaggattattcatcgctcgttttgctaaacataagacctcttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398627 |
tccaattctactatgttttccttagcaacaagacggtaaacaactaggttgatcttaggattattcatcgctcgttttgctaaacataagacctcttcat |
38398726 |
T |
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| Q |
201 |
catcgtcatttccacctaaatatatgatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38398727 |
catcgtcatttccacctaaatatatgatg |
38398755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38380898 - 38381126
Alignment:
| Q |
1 |
tgctgtttgtgatccattctcagtaaaaatttcttgatacctcacattttcagcatttttcaattcttccaacatttcatcgccaattaccgttaattcc |
100 |
Q |
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|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| | || ||| |
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| T |
38380898 |
tgctgtttgtgatccattcttagtgaaaacttcttgatacctcacattttcagcatgtttaaattcttccaacatttcatcaccaattaccatgaactcc |
38380997 |
T |
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| Q |
101 |
tccaattctactatgttttccttagcaacaagacggtaaacaactaggttgatcttaggattattcatcgctcgttttgctaaacataagacctcttcat |
200 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38380998 |
tccaattcttctatgttttccttagcaataagacggtaaacaactaggttgatcttaggattattcatcgctcgttttgctaaacataagacctcttcat |
38381097 |
T |
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| Q |
201 |
catcgtcatttccacctaaatatatgatg |
229 |
Q |
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| T |
38381098 |
catcgtcatttccacctaaatatatgatg |
38381126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38389764 - 38389992
Alignment:
| Q |
1 |
tgctgtttgtgatccattctcagtaaaaatttcttgatacctcacattttcagcatttttcaattcttccaacatttcatcgccaattaccgttaattcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||| |
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| T |
38389764 |
tgctgtttgtgatccattctcagtaaaaacttcttgatacctcacattttcagcatgtttcaattcttccaacatttcatcaccaattaccattaactcc |
38389863 |
T |
|
| Q |
101 |
tccaattctactatgttttccttagcaacaagacggtaaacaactaggttgatcttaggattattcatcgctcgttttgctaaacataagacctcttcat |
200 |
Q |
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|||| |||| ||||||||| | ||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38389864 |
tccacttctgctatgtttttcctagaaacaagacagtaaacaactaggttgatcctaggattattcatcattcgttttgctaaacataagacctcttcat |
38389963 |
T |
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| Q |
201 |
catcgtcatttccacctaaatatatgatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38389964 |
catcgtcatttccacctaaatatatgatg |
38389992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 37841357 - 37841133
Alignment:
| Q |
5 |
gtttgtgatccattctcagtaaaaatttcttgatacctcacattttcagcatttttcaattcttccaacatttcatcgccaattaccgttaattcctcca |
104 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||| |||| ||||||||||||||| | |||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
37841357 |
gtttctgatccattctcagtgaaaacttcttcatacttcacattttcagcatgtctcaattcttccaacatttcatctccaattaccattaactcctcca |
37841258 |
T |
|
| Q |
105 |
attctactatgttttccttagcaacaagacggtaaacaactaggttgatcttaggattattcatcgctcgttttgctaaacataagacctcttcatcatc |
204 |
Q |
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||||| | ||||| ||||||||||||||||| |||||||| ||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
37841257 |
attcttcaatgttctccttagcaacaagacgataaacaaccaggttgatcctatgattattcattgctctttttgctaaacataagacctcttcatcatc |
37841158 |
T |
|
| Q |
205 |
gtcatttccacctaaatatatgatg |
229 |
Q |
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||||||||| ||||||||||||||| |
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| T |
37841157 |
gtcatttccgcctaaatatatgatg |
37841133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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