View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_63 (Length: 240)
Name: NF11718_low_63
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15942583 - 15942806
Alignment:
| Q |
1 |
tgaccaatcttatatttacattttactagtactattgctttgagcaagtgttgcagtctcagctgctgaaatttcccaataagatgagtaaaggatatgg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15942583 |
tgaccaatcttatatttgcattttactagtactattgctttgagcaagtgttgcagtctcagctgctgaaatttcccaataagatgagtaaaggatatgg |
15942682 |
T |
|
| Q |
101 |
cttatattggtttgaatcagcattatcatacacattaactaagaaatttgttgttgaactccaaaggggtccttttgtagaaatttacattcaagcaaaa |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15942683 |
cttatattggtttgaatcagcactatcatacacattaactaagaaatttgttgttgaactccaaaggggtccttttgcagaaatttacattcaagcaaaa |
15942782 |
T |
|
| Q |
201 |
tcgatttcttgatatacaagttaa |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
15942783 |
tcgatttcttgatatacaagttaa |
15942806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 16396975 - 16396895
Alignment:
| Q |
144 |
aaatttgttgttgaactccaaaggggtccttttgtagaaatttacattcaagcaaaatcgatttcttgatatacaagttaa |
224 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
16396975 |
aaatttgttgttgaactccaaaagggtctttctgtagaaatttacctacaagtaaaatcgatttcttgatatacaagttaa |
16396895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 16399762 - 16399682
Alignment:
| Q |
144 |
aaatttgttgttgaactccaaaggggtccttttgtagaaatttacattcaagcaaaatcgatttcttgatatacaagttaa |
224 |
Q |
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|||||||||||||||||||||| || | || |||||||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
16399762 |
aaatttgttgttgaactccaaaaggtttctgttgtagaaatttacgtacaagtaaaatcgatttcttgatatacaagttaa |
16399682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 16400057 - 16399948
Alignment:
| Q |
1 |
tgaccaatcttatatttacattttactagtactattgctttgagcaagtgttgcagtctcagctgctgaaatttcccaataagatgagtaaaggatatgg |
100 |
Q |
| |
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|||||||||| | |||||||||| |||||||||||||| ||||||| || |||| ||||| |||| |||||||||| |||| ||| ||||| |||| |
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| T |
16400057 |
tgaccaatctcgtgtttacatttttatagtactattgcttggagcaagagtagcagcttcagcagctgcaatttcccaagaagacgagaaaagggcatgg |
16399958 |
T |
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| Q |
101 |
cttatattgg |
110 |
Q |
| |
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|| ||||||| |
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| T |
16399957 |
ctcatattgg |
16399948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16397223 - 16397163
Alignment:
| Q |
1 |
tgaccaatcttatatttacattttactagtactattgctttgagcaagtgttgcagtctca |
61 |
Q |
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||||||||||| | |||||||||| ||||||||||||||| | ||||| ||||||| |||| |
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| T |
16397223 |
tgaccaatcttgtgtttacatttttctagtactattgcttggcgcaagagttgcagcctca |
16397163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 14308086 - 14308162
Alignment:
| Q |
148 |
ttgttgttgaactccaaaggggtccttttgtagaaatttacattcaagcaaaatcgatttcttgatatacaagttaa |
224 |
Q |
| |
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||||||||||| |||||| ||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
14308086 |
ttgttgttgaattccaaaagggtcctgtagtagaaatttacgtacaagcaaaatcgatttcttgatatacaagttaa |
14308162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 14307787 - 14307896
Alignment:
| Q |
1 |
tgaccaatcttatatttacattttactagtactattgctttgagcaagtgttgcagtctcagctgctgaaatttcccaataagatgagtaaaggatatgg |
100 |
Q |
| |
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||||||||||| | |||||||||| ||||||||||||||| ||||||| ||||||| ||| ||||||| |||||| ||| ||||| || ||||| |||| |
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| T |
14307787 |
tgaccaatcttgtgtttacatttttctagtactattgcttggagcaagagttgcagcctcggctgctgcaatttctcaagaagatcagaaaagggcatgg |
14307886 |
T |
|
| Q |
101 |
cttatattgg |
110 |
Q |
| |
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|| ||||||| |
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| T |
14307887 |
ctcatattgg |
14307896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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