View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11718_low_66 (Length: 234)
Name: NF11718_low_66
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_66 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 919536 - 919407
Alignment:
| Q |
56 |
gccacacctacctcctcccttctctgcccaag-cacaaaatcggattccaagtccactcatagaataggcacaccaggattttagttctactcaaaaacc |
154 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
919536 |
gccacgcctacctcctcccttctct-cccaagacacaaaatcggattccaactccactcaaagaaaaggcacactgggatattagttctactcaaaaacc |
919438 |
T |
|
| Q |
155 |
acctccaagacaacacctcgatctcctccac |
185 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
919437 |
acctccaagacaacaccttgatctcctccac |
919407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 29973837 - 29973710
Alignment:
| Q |
56 |
gccacacctacctcctcccttctctgcccaagcacaaaatcggattccaagtccactcatagaataggcacaccaggattttagttctactcaaaaacca |
155 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||| |||| ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
29973837 |
gccacacctacctcctcccttctct-cccaag-acacaatcggattccaactccactcaaagaagaggcacaccgggatattagttctactcaaaaacca |
29973740 |
T |
|
| Q |
156 |
cctccaagacaacacctcgatctcctccac |
185 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |
|
|
| T |
29973739 |
ccttcaagacaacaccttcatctcctccac |
29973710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 5104354 - 5104276
Alignment:
| Q |
56 |
gccacacctacctcctcccttctctgcccaag-cacaaaatcggattccaagtccactcatagaataggcacaccaggat |
134 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||| ||||||||| |||| |
|
|
| T |
5104354 |
gccacacctacctcctcccttctct-cccaagacacaaaatcgaattccaactccactcaaagaaaaggcacaccgggat |
5104276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 27185585 - 27185631
Alignment:
| Q |
139 |
gttctactcaaaaaccacctccaagacaacacctcgatctcctccac |
185 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
27185585 |
gttcttctcaaaaaccacctccaagacaaccccttgatctcttccac |
27185631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 27185633 - 27185670
Alignment:
| Q |
175 |
atctcctccacctccaaatttctcccattgaaaatctt |
212 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
27185633 |
atctcatccacctcaaaatttctcccattgaaaatctt |
27185670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University