View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_67 (Length: 232)
Name: NF11718_low_67
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_67 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 6858643 - 6858445
Alignment:
| Q |
19 |
agataagggcacacctatcttcttaggtagaaatgcattctctttctttatcatatcagatgcattatctctcattgcatcttcatcatccgttttaatg |
118 |
Q |
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| T |
6858643 |
agataagggcacacctatcttcttaggtagaaatgcattctctttctttatcatatcagacgcattatctctcactgcatcttcatcatccgttttaatg |
6858544 |
T |
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| Q |
119 |
tttattggggttcttatatcacgttatactgaggaagacttcgtcacaagtttgccaattaagttattgtttgcccttttcacaattttcttgtctgtg |
217 |
Q |
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| T |
6858543 |
tttattggggtccttatatcacgttatactgaggaagacttcgtcacaagtttgccaattaagttattgtttggccttttcacaattttcttgtctgtg |
6858445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 6106182 - 6106379
Alignment:
| Q |
20 |
gataagggcacacctatcttcttaggtagaaatgcattctctttctttatcatatcagatgcattatctctcattgcatcttcatcatccgttttaatgt |
119 |
Q |
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| T |
6106182 |
gataaaggaacacctatctttttaggtaaaaatgcattttctttctttattgtaacagattccttatctctcattgcatccgcatcatcagttttgatgt |
6106281 |
T |
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| Q |
120 |
ttattggggttcttatatcacgttatactgaggaagacttcgtcacaagtttgccaattaagttattgtttgcccttttcacaattttcttgtctgtg |
217 |
Q |
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| T |
6106282 |
ttattgggattcttacatcgcgttatgctgaagaagacttcaacacgagtttgcccgctaagttattgtttggccttttcacaattttcttgtctgtg |
6106379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 6129690 - 6129524
Alignment:
| Q |
51 |
atgcattctctttctttatcatatcagatgcattatctctcattgcatcttcatcatccgttttaatgtttattggggttcttatatcacgttatactga |
150 |
Q |
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| T |
6129690 |
atgcattttctctcttcattatagcagacgcgttatctctaattacatctacttcgtcagttttgacatttattggtatccttacatcgcgttatgccga |
6129591 |
T |
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| Q |
151 |
ggaagacttcgtcacaagtttgccaattaagttattgtttgcccttttcacaattttcttgtctgtg |
217 |
Q |
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| T |
6129590 |
ggaagacttcgtcacaagtttgccggttaagttattgtttggccttttcaccattttcttgtctgtg |
6129524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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