View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_7 (Length: 676)
Name: NF11718_low_7
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 327 - 658
Target Start/End: Complemental strand, 32674298 - 32673968
Alignment:
| Q |
327 |
cggatactattggaatgcttaggagcgtttgttgggtcaaatttgaaaagtataccttttttcttcatttatgctttaaaaattaaataaaagtgtgaca |
426 |
Q |
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| T |
32674298 |
cggatactattggaatgcttaggagcgtttgttgggtcaaatttgaaaagtataccttttttcttcatttatgctttaaaaattaaataaaagtgtgaca |
32674199 |
T |
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| Q |
427 |
aagaaagcaaaaatgaattaatgtaccactatataattcctctactcttcaccacctttcacattctcacattttggttcttgatcttcttcgaggtcta |
526 |
Q |
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| T |
32674198 |
aagaaagcaaaaataaattaatgtaccactatataattcctctactcttcaccacctttcacattctcacattttggttcttgatcttcttcgaggtcta |
32674099 |
T |
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| Q |
527 |
gcaacctcgtagagacaagaattccaccattcaattcttaagaagaagnnnnnnntcttttttcaattttgtaagtagggattttgtagttattaatttt |
626 |
Q |
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| T |
32674098 |
gtaacctcgtagagacaagaattccaccattcaattcttaagaagaa-aaaaaaatcttttttcaattttataagtagggattttgtagttattattttt |
32674000 |
T |
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| Q |
627 |
attatatagttttgagaaatggaggtacattc |
658 |
Q |
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| T |
32673999 |
attatatagttttgagaaatggaggtacattc |
32673968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 34 - 263
Target Start/End: Complemental strand, 32674592 - 32674362
Alignment:
| Q |
34 |
atttcttaaatgtactaatgaagcttctatctaattttcttgtccattactagaaaaatgacagaaacaactgggtcccttgttggctgttccctatttt |
133 |
Q |
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| T |
32674592 |
atttcttaaatgtaccaatgaagcttctatctaattttcttgtccattactagaaaaatgacagaaacaattgggtcccttgttggctgttccctatttt |
32674493 |
T |
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| Q |
134 |
tgccagttcatattttagccgttgaactattcttttataacaagtcttgtacatatacacggtgtgttgtagctgtacttgaattcaacacatcaacc-a |
232 |
Q |
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| T |
32674492 |
tgccagttcatattttagccgttgaactattcttttataacaagtcttgtacatatacacggtgtgttgtagctgtacttgaattcaacacatcaaccaa |
32674393 |
T |
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| Q |
233 |
ctactacattttaacacattgtaacgttagc |
263 |
Q |
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| T |
32674392 |
ctactacattttaacacattgtaacgttagc |
32674362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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