View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_low_9 (Length: 592)
Name: NF11718_low_9
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 232 - 426
Target Start/End: Original strand, 31385614 - 31385811
Alignment:
| Q |
232 |
ttgttcagcttgtttccgatctttacacctttctactctagttattatgcggtgccacagggcctttgaaagttgtggaatgatttcatattttttcata |
331 |
Q |
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| T |
31385614 |
ttgttcagcttgtttccgatctttacacctttctactctagttattatgcggtgccacagggcatttgaaagtcgtggaatgatttcatattttttcata |
31385713 |
T |
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| Q |
332 |
agcctgcctgttagtgttgtgtaattggtagttcgagttcaagtctcctcttgccaatggtttttgttaagtctca---tggttcatcctgataagtc |
426 |
Q |
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| T |
31385714 |
agcctgcctgttagtgttgtgtaattggtagttcgagttcaagtctcctcttgccaatggtttttgttaagtctcatggtggttcatcctgataagtc |
31385811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 31385446 - 31385565
Alignment:
| Q |
108 |
atgtttgagggagtaaaacttccctctaaacttgttgttttatcgcggtgttgtacatgagtacacacataatctctctgtctcttgtgagtttgctctt |
207 |
Q |
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| T |
31385446 |
atgtttgaaggagtaaaacttccctctaaacttgttgttttattgcggtgttgtacatgagtacacacataatctctctgtctcttgcaagtttgctctt |
31385545 |
T |
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| Q |
208 |
taggcgtggtatgacagttt |
227 |
Q |
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| T |
31385546 |
taggcgtggtatgacagttt |
31385565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 31385298 - 31385391
Alignment:
| Q |
17 |
aagaacaatgagttgaggatctgctggtcgttttaagaactaggttgcatgatactaatgatcattcactgttagctcattgtatttctctatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31385298 |
aagaacaatgagttgaggatctgctggtcgttttaagaactaggttgcatgatactaatgatcattcactgttagctcattgtatttctctatg |
31385391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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