View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11719_low_1 (Length: 1016)

Name: NF11719_low_1
Description: NF11719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11719_low_1
NF11719_low_1
[»] chr6 (6 HSPs)
chr6 (614-906)||(11226960-11227252)
chr6 (286-553)||(11227252-11227519)
chr6 (1-231)||(11227574-11227804)
chr6 (134-231)||(10128243-10128340)
chr6 (17-90)||(11227775-11227848)
chr6 (286-378)||(10128093-10128187)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-161; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 614 - 906
Target Start/End: Complemental strand, 11227252 - 11226960
Alignment:
Q  614 atgtctctaggcttcatatgacttacacaagaccaaccttcttcaaatggatcatcaacataatataccattctagcatcagttgcaaggatgaatggtt 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11227252 atgtctctaggcttcatatgacttacacaagaccaaccttcttcaaatggatcatcaacataatataccattctagcatcagttgcaaggatgaatggtt 11227153  T
Q  714 catctacttcattcacaccagtgtgtatcaagcgagagaaattcacacttggtattccaaattgatcaatcttaattcccttgttaggtctagtatctac 813  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11227152 catctacttcattcacaccagtgtgtatcaagctagagaaattcacacttggtattccaaattgatcaatcttaattcccttgttaggtctagtatctac 11227053  T
Q  814 ccaaacacacttgaaaagcacaaccctcagcttaccatagtaatcaagttctatgatgtcaaccaatttcccataatacatctcatcacttga 906  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11227052 ccaaacacacttgaaaagcacaaccctcagcttaccatagtaatcaagttctatgatgtcaaccaatttcccataatacatctcatcacttga 11226960  T

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Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 286 - 553
Target Start/End: Complemental strand, 11227519 - 11227252
Alignment:
Q  286 gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaattactct 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11227519 gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaactactct 11227420  T
Q  386 aacataaaattagcatcttcatcactacagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgacatttggct 485  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11227419 aacatgaaattagcatcttcatcactacagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgatatttggct 11227320  T
Q  486 cttgttcattgtcatcttcttgcagtaattgcaagtcttctatgttctccacagtttgctcacaaaaa 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11227319 cttgttcattgtcatcttcttgcagtaattgcaagtcttctatgttctccacagtttgctcacaaaaa 11227252  T

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Target: chr6; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 11227804 - 11227574
Alignment:
Q  1 attgttgctttgttggtgttgtggctgaacatttggaattaaggaagggccagactgattgttgttgctttgttggtgttgtggatgaacttcattttcc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11227804 attgttgctttgttggtgttatggctgaacatttggaattaaggaagggccagactgattgttgttgctttgttggtgttgtggatgaacttcattttcc 11227705  T
Q  101 gtattttcagactgattgttgttacctcgtcgtaacctttctagcatatcttttcctgaagacttgcgttttgacttcatctcgaatcaaatatctgcac 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11227704 gtatttccagactgattgttgttacctcgtcgtaacctttctagcatatcttttcctgaagacttgcgttttgacttcatctcgaatcaaatatctgcac 11227605  T
Q  201 aatttgctaaaaaatgctaaaacatggaatg 231  Q
    |||||||||||||||||||||||||||||||    
T  11227604 aatttgctaaaaaatgctaaaacatggaatg 11227574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 10128340 - 10128243
Alignment:
Q  134 aacctttctagcatatcttttcctgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgctaaaaaatgctaaaacatggaatg 231  Q
    |||||||||| |||||||||||||| |||||||| |||  |||||||||  ||||||||||||||||||||||||||  || |||||||| |||||||    
T  10128340 aacctttctaccatatcttttcctggagacttgcatttctacttcatcttaaatcaaatatctgcacaatttgctaaccaaagctaaaacgtggaatg 10128243  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 11227848 - 11227775
Alignment:
Q  17 tgttgtggctgaacatttggaattaaggaagggccagactgattgttgttgctttgttggtgttgtggatgaac 90  Q
    ||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||    
T  11227848 tgttgtggctgaataatgggaattaaggaagggccagactgattattgttgctttgttggtgttatggctgaac 11227775  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 286 - 378
Target Start/End: Complemental strand, 10128187 - 10128093
Alignment:
Q  286 gtacaaagttcataaaccttaattgagttgaaaagaacaata--aactatgacttatagcttattagaaaagcacaaaatgttcatataattaaa 378  Q
    ||||||||||||||||| |||||||||||||| || |||| |  | ||||| || |||||||||  ||||| |||| ||||||||||||||||||    
T  10128187 gtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttcatataattaaa 10128093  T

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