View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11719_low_3 (Length: 340)
Name: NF11719_low_3
Description: NF11719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11719_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 39123747 - 39123437
Alignment:
| Q |
18 |
tgcataatcggagtattgagttccttttcagaatctaaagcacaattagaaagaaagctccgtctaatgttaaacatgcagcagactccaaacaatgtat |
117 |
Q |
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| T |
39123747 |
tgcataatcggagtattgagttccttttcagaatctaaagcacaattagaaagaaagctccgtctaatgttaaacatgcagcagactccaaacaatgtat |
39123648 |
T |
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| Q |
118 |
atataaaaaactttccaaaaattcttcacagttttacatataattatcacattaatatgtgaagtgaacacagagttacacgccttaaaatgagtagcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39123647 |
atataaaaaactttccaaaaattcttcacagttttacatataattatcacattaatatgtgaagtgaacacagagttacacgccttaaaatgagtagcat |
39123548 |
T |
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| Q |
218 |
atttaaacagtttcattcttctcccttataaatccaaaggaactgatttgaccctgcttttttcttttgtaagatattaaaccaagtcaaattgaataaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39123547 |
atttaaacagtttcattcttctcccttataaatccaaaggaactgatttgaccctgcttttttcttttgtaagatattaaaccaagtcaaattgaataaa |
39123448 |
T |
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| Q |
318 |
atgatgtccat |
328 |
Q |
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|||||| |||| |
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| T |
39123447 |
atgatggccat |
39123437 |
T |
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