View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11719_low_7 (Length: 252)

Name: NF11719_low_7
Description: NF11719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11719_low_7
NF11719_low_7
[»] chr1 (6 HSPs)
chr1 (1-171)||(33417050-33417218)
chr1 (1-82)||(15725766-15725847)
chr1 (1-82)||(15733817-15733898)
chr1 (1-82)||(15774949-15775030)
chr1 (1-86)||(15753060-15753145)
chr1 (14-82)||(15761663-15761731)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 33417218 - 33417050
Alignment:
Q  1 gatggaactgtgaatcttaaagggaaacctgttcttagatccaaaactggtggttggaaagcttgttcctttgttgttggtaaaatctctcactcnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  33417218 gatggaactgtgaatcttaaagggaaacctgttcttagatccaaaactggtggttggaaagcttgttcctttgttgttggtaaaatctctcactcttttt 33417119  T
Q  101 nnatatactagtccttttcatctctttttatgtttagaactttgaagtaaaagtgtttgttattctctata 171  Q
      ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  33417118 ttatatactagtccttttcatctc--tttatgtttagaactttgaagtaaaagtgtttgttattctctata 33417050  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15725766 - 15725847
Alignment:
Q  1 gatggaactgtgaatcttaaagggaaacctgttcttagatccaaaactggtggttggaaagcttgttcctttgttgttggta 82  Q
    |||||||||||  ||||||||||||||||| |||| | ||||||||||||| |||||||||||||||| ||  |||||||||    
T  15725766 gatggaactgttgatcttaaagggaaacctattctcaaatccaaaactggttgttggaaagcttgttcattctttgttggta 15725847  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15733817 - 15733898
Alignment:
Q  1 gatggaactgtgaatcttaaagggaaacctgttcttagatccaaaactggtggttggaaagcttgttcctttgttgttggta 82  Q
    |||||||||||  ||||||||||||||||| |||| | ||| ||||||||| |||||||||||||||||||  |||||||||    
T  15733817 gatggaactgttgatcttaaagggaaacctattctcaaatctaaaactggttgttggaaagcttgttccttctttgttggta 15733898  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15774949 - 15775030
Alignment:
Q  1 gatggaactgtgaatcttaaagggaaacctgttcttagatccaaaactggtggttggaaagcttgttcctttgttgttggta 82  Q
    |||||||||||  |||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||  |||||||||    
T  15774949 gatggaactgttgatcttaaaggaaaacctgttctcagatcaaaaacaggtggctggaaagcttgctccttccttgttggta 15775030  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 15753060 - 15753145
Alignment:
Q  1 gatggaactgtgaatcttaaagggaaacctgttcttagatccaaaactggtggttggaaagcttgttcctttgttgttggtaaaat 86  Q
    ||||||||| |  |||||||||| ||  ||||||| |||||||| || ||||||||||||||||| || ||| |||||||||||||    
T  15753060 gatggaactattgatcttaaaggaaattctgttctcagatccaagacaggtggttggaaagcttgctcatttcttgttggtaaaat 15753145  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 15761663 - 15761731
Alignment:
Q  14 atcttaaagggaaacctgttcttagatccaaaactggtggttggaaagcttgttcctttgttgttggta 82  Q
    ||||||| || ||||||||||| |||||||| || ||| ||||||||||||| || ||  |||||||||    
T  15761663 atcttaatggaaaacctgttctaagatccaagacaggtcgttggaaagcttgctcattccttgttggta 15761731  T

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