View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1171_high_2 (Length: 485)
Name: NF1171_high_2
Description: NF1171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1171_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 22 - 419
Target Start/End: Original strand, 852492 - 852889
Alignment:
| Q |
22 |
gtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaaacactgaaagggagttagatagaacag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
852492 |
gtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaaacactgaaagggagttagatagaacag |
852591 |
T |
|
| Q |
122 |
ctgtggaagaataatttctatggtaataactgctgaaacaactttagcaaaaagaaatattgagtagattctaagtggatcatatcaaatttcaaggaaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
852592 |
ctgtggaagaataatttctatggtaataactgctgaaacaactttagcaaaaagaaatattgagtagattctaagtgggtcatatcaaatttcaaggaaa |
852691 |
T |
|
| Q |
222 |
tggaatcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaaattttttcaacaggtgtgcttgcaagttactccatt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
852692 |
tggaatcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaaattttttcaacaggtgtgcttgcaagttactccatt |
852791 |
T |
|
| Q |
322 |
tgctatgaaatgcaaaatcatttgtaaaagttctaataagctcttctaaacactacctaaagtctaaaaaaggtggggacttgaggaggaaaatggtg |
419 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
852792 |
tgctatgaaatgcaaaatcatttataaaagttctaataagctcttctaaacactacctaaagtctaaaaaaggtggggacttgaggaggaaaatggtg |
852889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 847549 - 847828
Alignment:
| Q |
11 |
ataatataccagtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaaacactgaaagggagtt |
110 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
847549 |
ataatgtaccagtcatatgaaatggagatagaagggatattgttgaagaaggcctctcgagctccagctacagtgcctgagtaaacactgaaagggaatt |
847648 |
T |
|
| Q |
111 |
agata------gaacagctgtggaagaataatttctatggtaataactgctgaaacaactttagcaaaaagaaatattgagtagattctaagtggatcat |
204 |
Q |
| |
|
| | |||||| || | || ||||||| ||||||| ||| ||||| ||| |||||||||||||| || | || || |||| || |||| |
|
|
| T |
847649 |
actaattacacaaacagcaacgg-acaaaaatttctgtggtaatgactactgaataaaccttagcaaaaagaaaaatagtataaatcataagagggtcat |
847747 |
T |
|
| Q |
205 |
atcaaatttcaaggaaatggaatcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaa |
285 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||| ||||| ||||||||||||||||||| || || |||||| ||||||| |
|
|
| T |
847748 |
ttcaaatttcgaggaaatgaaatcatcatcgtctcttcattgcttaggatgataatccttcgtcatttgaaataaatagaa |
847828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 47054884 - 47054797
Alignment:
| Q |
13 |
aatataccagtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaaacactg |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||| ||||||| |||||| ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
47054884 |
aatataccagtcgtatgaaatggagatagaaggtatatcatagaagaatgcctctcgagctccagcaactgtgcctgagtaaacactg |
47054797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 47064072 - 47063994
Alignment:
| Q |
16 |
ataccagtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaa |
94 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||| |||||| |||| || | || |||| || |||||||||||| |
|
|
| T |
47064072 |
ataccagtcatatgaaatggagatagaaggtatatcatagaagaatgcctttcaaacttcagcaactgtgcctgagtaa |
47063994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University