View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1171_high_5 (Length: 413)
Name: NF1171_high_5
Description: NF1171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1171_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 374
Target Start/End: Original strand, 33757444 - 33757804
Alignment:
| Q |
10 |
agatgaataaaagacattctatgatacaatattatttctcatagtgttgatatttcaacactccttcaaaaatctgcattcatttaacactcc---tcac |
106 |
Q |
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| T |
33757444 |
agatgaataaaagacattctatgatacaatattatttctcatggtgttgatatttcaacactccttcaaaaatctgcattcatttaacactcctcctcac |
33757543 |
T |
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| Q |
107 |
tctctcnnnnnnnnnnnnnnnnnnnnnntcaactctcctcatactcaatctttcttaatcacctacgaatcatatccatcattcccttttctttattcaa |
206 |
Q |
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| T |
33757544 |
tctctcaaaaaaaaaaaaaaaa------tcaactctcctcatactcaatctttcttaatcacctacgaatcatattcatcattcccttttctttattcaa |
33757637 |
T |
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| Q |
207 |
ttctctctccatctccgaaggtgtataataacattggatatccaagaatatttttcctattccttatattcatatatgacttttgctatagnnnnnnnnn |
306 |
Q |
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| T |
33757638 |
ttctctctccatctccgaaggtgtataataacattggatatccaagaatatttttcctattccttatattcatatatgacttttgctatag-aaaaaaaa |
33757736 |
T |
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| Q |
307 |
ntagtctaaatgcattaaggtgtatatggattatgataccaacaatagtttggtgacaactaggtttt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33757737 |
atagtctaaatgcattaaggtgtatatggattatgataccaacaatagtttggtgacaactaggtttt |
33757804 |
T |
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