View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1171_high_8 (Length: 270)

Name: NF1171_high_8
Description: NF1171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1171_high_8
NF1171_high_8
[»] chr7 (16 HSPs)
chr7 (37-188)||(23840585-23840738)
chr7 (37-188)||(23844033-23844186)
chr7 (37-187)||(23861237-23861389)
chr7 (37-187)||(23864831-23864983)
chr7 (37-187)||(23857268-23857420)
chr7 (39-187)||(23817442-23817592)
chr7 (45-187)||(23791695-23791839)
chr7 (39-187)||(23802490-23802640)
chr7 (76-187)||(23838095-23838206)
chr7 (76-187)||(23807958-23808069)
chr7 (37-187)||(23852933-23853085)
chr7 (45-134)||(23797963-23798054)
chr7 (43-187)||(23855314-23855460)
chr7 (45-187)||(23823128-23823272)
chr7 (45-187)||(23828102-23828246)
chr7 (63-187)||(23849088-23849214)
[»] chr4 (1 HSPs)
chr4 (142-185)||(6273702-6273745)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 23840738 - 23840585
Alignment:
Q  37 cagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatcc 134  Q
    ||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||| ||||| |||||||||||  |||||||    
T  23840738 cagtttttgttcacaatgataagcccatttcagaatctcttgtgattcttgagtacattgatgaggtttggaagcaaaaccccattttgccaactgatcc 23840639  T
Q  135 acaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 188  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23840638 acaccaaagagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 23840585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 23844186 - 23844033
Alignment:
Q  37 cagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatcc 134  Q
    ||||||||||||||||||| || |||||||||||||| |  |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  23844186 cagtttttgttcacaatgagaaacctatatcagaatcccttgtgattcttgagtacattgatgaggtttggaagcaaaaccctattttgccttctgatcc 23844087  T
Q  135 acaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 188  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  23844086 acaccaaagagccttggctcgattttggtcaaaattcatcgatgacaaggtaac 23844033  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 23861389 - 23861237
Alignment:
Q  37 cagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatcc 134  Q
    ||||| ||||||||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  23861389 cagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatcc 23861290  T
Q  135 acaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
    | |||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  23861289 ataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 23861237  T

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Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 23864983 - 23864831
Alignment:
Q  37 cagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatcc 134  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||| || || |||||    
T  23864983 cagtttttgttcacaatgagaagcctatatcagaatctcttgtgattcttcagtatattgatgaggtttggaaacaaaatcccattttaccgtccgatcc 23864884  T
Q  135 acaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
    | |||||||| | ||||||||||||||||| || |||||||||||||||||||    
T  23864883 ataccaaaaatcattggctcgattttggtccaagttcatcgatgacaaggtaa 23864831  T

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Target: chr7; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 23857420 - 23857268
Alignment:
Q  37 cagtttttgttcacaatgataagcctatatcagaatctcgt--gattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatcc 134  Q
    ||||||||||||||||||| |||||||||||||| || | |  |||| ||||||| |||||||||  ||||||||||||||| || ||||||||||||||    
T  23857420 cagtttttgttcacaatgaaaagcctatatcagagtcccttttgattattgagtatattgatgagacttggaaacaaaatcctatcttgccttctgatcc 23857321  T
Q  135 acaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
    | |||||| ||||||||||||||||||||| || |||||||| ||||||||||    
T  23857320 ataccaaagagccttggctcgattttggtctaacttcatcgacgacaaggtaa 23857268  T

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Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 23817592 - 23817442
Alignment:
Q  39 gtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccac 136  Q
    |||||| |||| ||||||||||||||| |||| || |  ||||||||||| || |||||||||  ||||||||||||||| || |||||||||||||||     
T  23817592 gtttttattcataatgataagcctatagcagagtcacttgtgattcttgaatatattgatgagacttggaaacaaaatccaatattgccttctgatccat 23817493  T
Q  137 accaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
    |||||| |||||||| |||||||||||| ||  |||| |||||||||||||    
T  23817492 accaaagagccttggttcgattttggtccaacctcatagatgacaaggtaa 23817442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 23791839 - 23791695
Alignment:
Q  45 gttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccacaccaaa 142  Q
    ||||| ||||||||||| ||||||||||| |  |||||||||||||| |||||||||  ||||||||||||||| || ||||||||||||||  || |||    
T  23791839 gttcataatgataagcccatatcagaatcccttgtgattcttgagtatattgatgagacttggaaacaaaatcctatcttgccttctgatccttacgaaa 23791740  T
Q  143 aagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
     |||||||||||| || ||| | || ||||| ||||| |||||||    
T  23791739 gagccttggctcgtttctggaccaagttcatagatgataaggtaa 23791695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 23802640 - 23802490
Alignment:
Q  39 gtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccac 136  Q
    |||||| |||| ||||||||||| |||||||| || |  ||||||||||| || |||||||||  |||||||||||||||||| ||||||||||||||      
T  23802640 gtttttattcataatgataagcccatatcagagtcccttgtgattcttgaatatattgatgagacttggaaacaaaatcccatattgccttctgatcctt 23802541  T
Q  137 accaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
     | ||| |||||||||||| || ||||| || ||||| ||||| |||||||    
T  23802540 ccaaaagagccttggctcgtttctggtccaatttcattgatgataaggtaa 23802490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 23838095 - 23838206
Alignment:
Q  76 gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcg 175  Q
    ||||||||||||||||| ||||||  ||||||||||||||| || ||||||||||||||  | |||| |||||||||||| || ||||| || ||||| |    
T  23838095 gtgattcttgagtacatcgatgagacttggaaacaaaatcctatcttgccttctgatccttatcaaagagccttggctcgtttctggtctaagttcattg 23838194  T
Q  176 atgacaaggtaa 187  Q
    ||||||||||||    
T  23838195 atgacaaggtaa 23838206  T

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Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 23808069 - 23807958
Alignment:
Q  76 gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcg 175  Q
    |||||||||||||| |||||||||  |||||||||||| || || ||||||||||||||  | |||| |||| ||||||| || ||||| || ||||| |    
T  23808069 gtgattcttgagtatattgatgagacttggaaacaaaaccctatcttgccttctgatccttatcaaagagccatggctcgtttctggtccaatttcattg 23807970  T
Q  176 atgacaaggtaa 187  Q
    ||||||||||||    
T  23807969 atgacaaggtaa 23807958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 23852933 - 23853085
Alignment:
Q  37 cagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatcc 134  Q
    ||||| ||||||| ||||  |||||||| |||||||| ||||  ||||||||||| |||||||||| |||||||||||| || || |||||   ||||||    
T  23852933 cagttcttgttcataatgggaagcctatttcagaatcacgtgtgattcttgagtatattgatgaggcttggaaacaaaaccctatcttgcccaatgatcc 23853032  T
Q  135 acaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
      | |||| ||||||||  || |||||||| || ||||| |||||||||||||    
T  23853033 ttatcaaagagccttggaccgtttttggtctaagttcattgatgacaaggtaa 23853085  T

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Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 23798054 - 23797963
Alignment:
Q  45 gttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatcc 134  Q
    ||||| ||||||||||||||| |||||||||  |||||| |||| || |||||||||  ||||||||||||||| || ||||||||||||||    
T  23798054 gttcataatgataagcctatagcagaatctcttgtgattattgaatatattgatgagacttggaaacaaaatcctatcttgccttctgatcc 23797963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 23855314 - 23855460
Alignment:
Q  43 ttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccacacca 140  Q
    ||||||||||||| |||||  | ||||| |||||||  ||||||||||| |||||||||  |||||||||||| || || ||||||||||||||  || |    
T  23855314 ttgttcacaatgagaagcccgtttcagagtctcgtgtgattcttgagtatattgatgagacttggaaacaaaaccctatcttgccttctgatccttacaa 23855413  T
Q  141 aaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
    || |||||||| ||| |||||| | || ||| | ||||| |||||||    
T  23855414 aagagccttggatcgcttttgggccaagttcctagatgagaaggtaa 23855460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 23823272 - 23823128
Alignment:
Q  45 gttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccacaccaaa 142  Q
    ||||| |||||||| |||||| |||||||||  |||||| |||| || |||||||||  ||||||||||||||| || ||||||||||||||  |  |||    
T  23823272 gttcataatgataaacctatagcagaatctcttgtgattattgaatatattgatgagacttggaaacaaaatccaatcttgccttctgatccttataaaa 23823173  T
Q  143 aagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
     ||||||||| || || ||||| || || || ||||| |||||||    
T  23823172 gagccttggcacgtttctggtccaagtttatagatgataaggtaa 23823128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 23828246 - 23828102
Alignment:
Q  45 gttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccacaccaaa 142  Q
    ||||| ||||||||||| ||||||||||| |  ||||||||||||||  |||||||   |||||| |||||||| || || |||||||||||  || |||    
T  23828246 gttcataatgataagcccatatcagaatcccttgtgattcttgagtatgttgatgaaacttggaagcaaaatcctatcttaccttctgatccttacaaaa 23828147  T
Q  143 aagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 187  Q
     |||||||||||| || ||| | || ||||| ||||| |||||||    
T  23828146 gagccttggctcgtttctggacaaagttcatagatgataaggtaa 23828102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 23849088 - 23849214
Alignment:
Q  63 atatcagaatctcgtg--attcttgagtacattgatgaggtttggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgatttt 160  Q
    ||||||||||||||||  ||| ||||||| ||||| |||| ||||||||| || || || ||||||||||||||  || ||| ||| |||| ||| ||||    
T  23849088 atatcagaatctcgtgtgattattgagtatattgacgaggcttggaaacagaaccctatcttgccttctgatccttacaaaagagctttggatcggtttt 23849187  T
Q  161 ggtcgaaattcatcgatgacaaggtaa 187  Q
    |||| || ||||| ||||| |||||||    
T  23849188 ggtcaaagttcattgatgaaaaggtaa 23849214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 6273702 - 6273745
Alignment:
Q  142 aaagccttggctcgattttggtcgaaattcatcgatgacaaggt 185  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  6273702 aaagccttggctcgattttggtctagattcattgatgacaaggt 6273745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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