View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1171_high_9 (Length: 253)
Name: NF1171_high_9
Description: NF1171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1171_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40723478 - 40723701
Alignment:
| Q |
1 |
catcttctccctaatgcattgtagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtatcttttgaaattctctccaaatca |
100 |
Q |
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| T |
40723478 |
catcttctccctaatgcattgtagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtatcttttgaaattctctccaaatca |
40723577 |
T |
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| Q |
101 |
acctacagagaaagtcgtaaatgagcgaatgaaaatttgaggaaatcgaaaagaaaaatcacaacaaagcaatataaacttgattgtgggtaaaacctta |
200 |
Q |
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| T |
40723578 |
acctacagagaaagtcgtaaatgtgcgaatgaaaatttgaggaaatcgaaaagaaaaatcacaacaaagcaatataaacttgattgtgggtaaaacctta |
40723677 |
T |
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| Q |
201 |
ttaatacggcagctatcatgatta |
224 |
Q |
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||||||| |||||||||||||||| |
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| T |
40723678 |
ttaatactgcagctatcatgatta |
40723701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 40666528 - 40666376
Alignment:
| Q |
1 |
catcttctccctaatgcattgtagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtatcttttgaaattctctccaaatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40666528 |
catcttctccctaatgcattgtagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatca |
40666429 |
T |
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| Q |
101 |
acctacagag-aaagtcgtaaatgagcgaatgaaaatttgaggaaatcgaaaa |
152 |
Q |
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| T |
40666428 |
acctacagagtaaaatcgtaaatgagcaactgaaaatttgaggaaattgaaaa |
40666376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 40666378 - 40666346
Alignment:
| Q |
192 |
aaaaccttattaatacggcagctatcatgatta |
224 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
40666378 |
aaaaccttattaatactgcagctatcatgatta |
40666346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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