View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1171_low_1 (Length: 502)
Name: NF1171_low_1
Description: NF1171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1171_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 29176070 - 29175979
Alignment:
| Q |
94 |
atgggcaacacgccataaaaatgatcgaactttgtgagggacatgttgtttccatatcaaattccaacattttctttacacctatagtattc |
185 |
Q |
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| T |
29176070 |
atgggcaacacgccataaaaatgaccgaactttgtgagggacatgttgtttccatatcagattccaacattttctttacacctatagtattc |
29175979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 283 - 389
Target Start/End: Complemental strand, 29175882 - 29175777
Alignment:
| Q |
283 |
agggaggatgtatttgattgttgttttgtnnnnnnnccgttagtatcaaatccaatttcggatcactttttcaataccgaactaaactgaaccacacaca |
382 |
Q |
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| T |
29175882 |
agggaggatgtatttgattgttgttttgtaaaaaa-cggttaggatcaaatccaatttccgatcactttttcaaaaccgaactaaactgaaccgcacaca |
29175784 |
T |
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| Q |
383 |
taagtaa |
389 |
Q |
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| T |
29175783 |
taagtaa |
29175777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 11254498 - 11254442
Alignment:
| Q |
94 |
atgggcaacacgccataaaaatgatcgaactttgtgagggacatgttgtttccatat |
150 |
Q |
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| T |
11254498 |
atgggcaacacgccataaaaatgaccgaactttgtgagggacatgttgtttccatat |
11254442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 48085359 - 48085315
Alignment:
| Q |
325 |
gtatcaaatccaatttcggatcactttttcaataccgaactaaac |
369 |
Q |
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| T |
48085359 |
gtatcaaatcggatttcggatcactttttcaaaaccgaaccaaac |
48085315 |
T |
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