View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1171_low_13 (Length: 229)
Name: NF1171_low_13
Description: NF1171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1171_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 33757828 - 33757936
Alignment:
| Q |
101 |
gagaggaactagattttctttcgttttgttgaaataactaggnnnnnnnnn-ctcacttgtgttattacatatatccacatatggtgtgaggtcatgggc |
199 |
Q |
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| T |
33757828 |
gagaggaactagattttcttttgttttgttgaaataactaggttttttttttctcacttgtgttattacatatatccacatgtggtgtgcggtcatgggc |
33757927 |
T |
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| Q |
200 |
tatataata |
208 |
Q |
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||||||||| |
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| T |
33757928 |
tatataata |
33757936 |
T |
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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 33757738 - 33757800
Alignment:
| Q |
11 |
tagtttaaatgcattaaggtgtatttgtattatgataccaacaatagtttggtgacaactagg |
73 |
Q |
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|||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
33757738 |
tagtctaaatgcattaaggtgtatatggattatgataccaacaatagtttggtgacaactagg |
33757800 |
T |
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