View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_high_10 (Length: 392)
Name: NF11720_high_10
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 166 - 358
Target Start/End: Complemental strand, 923780 - 923592
Alignment:
| Q |
166 |
tattattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
265 |
Q |
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|||||||||||||| |||||||||||||||||| ||| || | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
923780 |
tattattagaacacatgtccatgtgtttgaaacttagatctgctgcattcatttctaaactctaaaaagacactatttttctatctaaactcttaaagaa |
923681 |
T |
|
| Q |
266 |
atctaaaaagacaccatttttcaatcggaactcttaaaagaagaaaaacatatgattagagacgcactttaaattaatagttattgaaacata |
358 |
Q |
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| T |
923680 |
atctaaaaagacaccatttttcaatccaaactctt-aaagaagaaaaacatatgattagagacacactttaa---aatagtgattgaaacata |
923592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 22996568 - 22996457
Alignment:
| Q |
16 |
tcaacatattatgtaatgcagctggtctaagattcaaaccgtctcgttaaaatgaaatagagctatctgttgatgtaagttattaataatgaataaatcc |
115 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22996568 |
tcaacatatcatgtaatgcagctgatctaagattcaaaccgtctcgttaaaatgaaatagagctatctattgatgtaagttattaataatgaataaatcc |
22996469 |
T |
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| Q |
116 |
aaataacttatt |
127 |
Q |
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|||||||||||| |
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| T |
22996468 |
aaataacttatt |
22996457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 2191743 - 2191819
Alignment:
| Q |
186 |
atgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaa |
262 |
Q |
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| T |
2191743 |
atgtgtttgaaacttatatcagttgcattcatttctaagctcttcaacgacaccttttttctatataagctcttaaa |
2191819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 166 - 366
Target Start/End: Original strand, 27540840 - 27541035
Alignment:
| Q |
166 |
tattattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
265 |
Q |
| |
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|||||||||||||| |||||||||||||||||| ||| | | |||||| |||| ||| || ||||| |||||||||||||||||||||||||||||||| |
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| T |
27540840 |
tattattagaacacatgtccatgtgtttgaaacttagattatctgcattcatttataagctataaaa-gacaccatttttctatctaaactcttaaagaa |
27540938 |
T |
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| Q |
266 |
atctaaaaagacaccatttttcaatcggaactcttaaaagaagaaaaacatatgattagagacgcactttaaattaatagttattgaaacatagtaattg |
365 |
Q |
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| T |
27540939 |
ctataaaacgacactatttttcaatcaaaattctt-aaagaagaaaaacacatgattaaagacatactttaaat---tagtgattgaaacatagtaattg |
27541034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 377
Target Start/End: Original strand, 46833118 - 46833310
Alignment:
| Q |
167 |
attattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaaa |
266 |
Q |
| |
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|||||||||| | ||||||||| |||||||| ||| ||| |||||| |||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
46833118 |
attattagaaaatatgtccatgtatttgaaacttagatcaactgcattcatttttaaactctaaaaagacaccatttttttatctaaactct-------- |
46833209 |
T |
|
| Q |
267 |
tctaaaaagacaccatttttcaatcggaactcttaaaagaagaaaaacatatgattagagacgcactttaaattaatagttattgaaacatagtaattga |
366 |
Q |
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|||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||| |||||||| |||| ||||||||||||| ||||| |
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| T |
46833210 |
---aaaaagacaccatttt-caatcgaaactcttaaa-gaagaaaaacacatgattagagac--actttaaaataatg---attgaaacatagttattga |
46833299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 45032223 - 45032127
Alignment:
| Q |
169 |
tattagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
265 |
Q |
| |
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|||||| |||| |||||||||||||||||| ||| | |||||||| |||| |||||||| ||||||||| ||||| ||||||| |||||||||||| |
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| T |
45032223 |
tattagcacacatgtccatgtgtttgaaacttagataagttgcatacatttataaactcttaaaagacacaattttactatctacactcttaaagaa |
45032127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 4357297 - 4357204
Alignment:
| Q |
171 |
ttagaacacttgtccatgtgtttgaaacatagttcagttgcattaatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
265 |
Q |
| |
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||||||||| ||||||||||||| |||| ||| |||| |||||| ||||| ||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
4357297 |
ttagaacacatgtccatgtgttttaaacttagatcagctgcattcatttccaaactct-taaagacacattttttatatctaaactcttaaagaa |
4357204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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