View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_high_11 (Length: 379)
Name: NF11720_high_11
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 41209712 - 41209588
Alignment:
| Q |
40 |
aacaagccaatcaaatcatatg-aacaaagttgtaaaaacatgattctttatcaaactcagttttgaacaatctattgagggcatgtagaataaaaaaga |
138 |
Q |
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| T |
41209712 |
aacaagccaatcaaatcataaacaacaaagtagtaaaaacatgattctttatcaaactcagttttgaa--atctattgagggtatgtaaaataaaaaaga |
41209615 |
T |
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| Q |
139 |
actttgcctctccactaaaaatattct |
165 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
41209614 |
acttcgcctctccactaaaaatattct |
41209588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 39851709 - 39851656
Alignment:
| Q |
219 |
atgttaaatcaaaatacatacattataatacactagaaaatgaggttactcacg |
272 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
39851709 |
atgttaaatcaaaatacatacattataatacattagaaaacaaggttactcacg |
39851656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 39855705 - 39855652
Alignment:
| Q |
219 |
atgttaaatcaaaatacatacattataatacactagaaaatgaggttactcacg |
272 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
39855705 |
atgttaaatcaaaatacatacattataatacattagaaaacaaggttactcacg |
39855652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 39860379 - 39860326
Alignment:
| Q |
219 |
atgttaaatcaaaatacatacattataatacactagaaaatgaggttactcacg |
272 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
39860379 |
atgttaaatcaaaatacatacattataatacattagaaaacaaggttactcacg |
39860326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 41199549 - 41199498
Alignment:
| Q |
62 |
aacaaagttgtaaaaacatgattctttatcaaactcagttttgaacaatcta |
113 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
41199549 |
aacaaagttgtaaaaacatgatttgtcatcaaactcagttttgaacaatcta |
41199498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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