View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_high_13 (Length: 338)
Name: NF11720_high_13
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_high_13 |
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| [»] scaffold0096 (1 HSPs) |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 10624095 - 10624411
Alignment:
| Q |
1 |
acaagccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcacataaaattga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10624095 |
acaagccaaggctgtgactataatcatacgcaaaggattaaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcacataaaattga |
10624194 |
T |
|
| Q |
101 |
attgctgaagttacaattccctgtattaaacattagaagaaaaaatgtcagaaacaacattagaatacctgtttaatattgtaacttggacctagcatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10624195 |
attgctgaagttacaattccctgtattaaacattagaagaaaaaatgtcagaaacaacattagaatacctgtttaatattgtaatttggacctagcatct |
10624294 |
T |
|
| Q |
201 |
tnnnnnnnntaaaattgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctctttaggcacccaacaattactcacaa |
300 |
Q |
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| T |
10624295 |
taaaaaaac-aaaatt-agttgggtgtgcgagtgtagatgggatcattgacacattattgataggtcattgctctttaggcacccaacaattactcacaa |
10624392 |
T |
|
| Q |
301 |
gcacctcaaactcattgtc |
319 |
Q |
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||||||||||||||||||| |
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| T |
10624393 |
gcacctcaaactcattgtc |
10624411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 20770676 - 20770962
Alignment:
| Q |
1 |
acaagccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcacataaaattga |
100 |
Q |
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||||||||||||| ||||||||||||| ||||||||| | |||||||| ||||||||||||| | |||||||||| ||| |||||||||||||| ||||| |
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| T |
20770676 |
acaagccaaggctctgactataatcattcgcaaaggagtaaaagcagtaacaaaaacaggtctcgtagttttaatgacatagccttgcacataatattga |
20770775 |
T |
|
| Q |
101 |
attgctgaagttacaattccctgtattaaacattagaagaaaaaatgtcag---aaacaacattagaatacctgtttaatattgtaacttggacctagca |
197 |
Q |
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|||| ||| |||| ||||| ||| | ||||||||||||||| |||||||| ||| || |||||||||| || ||||| ||||||||| |||||| | |
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| T |
20770776 |
attgatgaggttaatattccttgtgtaaaacattagaagaaagaatgtcaggaaaaaaaaaattagaatacttgcttaatgttgtaacttagacctaact |
20770875 |
T |
|
| Q |
198 |
tctt-----nnnnnnnntaaaattgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctctttag |
279 |
Q |
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|||| ||||||||||||||| || ||| ||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
20770876 |
tcttaaaaataaaaaataaaaattgagttgggtttgttagttcagatgggctcattggcccattattgataggtcattgctttttag |
20770962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 21095841 - 21095517
Alignment:
| Q |
5 |
gccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcacataaaattgaattg |
104 |
Q |
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||||| ||||||||||||||||| || |||||| | |||||||| |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||| |
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| T |
21095841 |
gccaaagctgtgactataatcattcgtaaaggagtaaaagcagtaacaaaaacaggtcctgtagttttaatgacatagccttgcacataatattgaattg |
21095742 |
T |
|
| Q |
105 |
ct-----gaagttacaattccctgtattaaacattagaagaaaaaatgtcagaaacaacattagaatacctgtttaatattgtaacttggacctagcatc |
199 |
Q |
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| || ||||| ||||||||| | |||||||||||||||||||| ||||||||| | |||||||| || ||||| |||||||||||||| | | | |
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| T |
21095741 |
atttgatgaggttactattccctgtgtaaaacattagaagaaaaaatgccagaaacaaaactagaatacttgcttaatgttgtaacttggaccaaacttt |
21095642 |
T |
|
| Q |
200 |
tt----nnnnnnnntaaaa-ttgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctctttaggcacccaacaattac |
294 |
Q |
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|| ||||| ||||||||||| || ||| ||||||| |||||| ||||||||||||| ||||||||| ||||| ||| ||||||| |
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| T |
21095641 |
ttaaaaataaaaaataaaatttgagttgggtctgttagttcagatgggttcattgacccattattgataagtcattgctttttagacacataacaattgt |
21095542 |
T |
|
| Q |
295 |
tcacaagcacctcaaactcattgtc |
319 |
Q |
| |
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|||||| ||||||||| |||||||| |
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| T |
21095541 |
tcacaaacacctcaaattcattgtc |
21095517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 21087320 - 21087444
Alignment:
| Q |
30 |
gcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcacataaaattgaattgctgaagttacaattccctgtattaa |
129 |
Q |
| |
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|||||||| | |||||||| |||||||||| ||| |||||||||| ||| |||||||||||||| ||||||||| ||| ||||| ||||| ||| | || |
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| T |
21087320 |
gcaaaggagtaaaagcagtaacaaaaacagttcctgtagttttaatgacatagccttgcacataatattgaattgatgaggttactattccttgtgtaaa |
21087419 |
T |
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| Q |
130 |
acattagaagaaaaaatgtcagaaa |
154 |
Q |
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||||||||||||| ||||||||||| |
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| T |
21087420 |
acattagaagaaagaatgtcagaaa |
21087444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 21087489 - 21087557
Alignment:
| Q |
211 |
aaaattgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctctttag |
279 |
Q |
| |
|
||||||||||||||| || ||| ||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
21087489 |
aaaattgagttgggtttgttagttcagatggggtcattggcccattattgataggtcattgctttttag |
21087557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 44102 - 44398
Alignment:
| Q |
1 |
acaagccaaggctgtgactataatcatacgcaaaggattgaaagcagtcacaaaaacaggtcccatagttttaattacagagccttgcacataaaattga |
100 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||| | |||||||||||||||||||| ||| ||| |||||| || |||||||||||||| ||||| |
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| T |
44102 |
acaagccaaagctgtgactgcaatcatccgcaaaggagtaaaagcagtcacaaaaacaggccccgtagctttaatgacgtagccttgcacataatattga |
44201 |
T |
|
| Q |
101 |
attgctgaagttacaattccctgtattaaacattagaagaaaaaatgtcagaaacaacattagaatacctgtttaatattgtaacttggacctagcatct |
200 |
Q |
| |
|
|||| || ||||| ||||||| | | ||||||||||||||||||||||| |||||| | | |||||| || ||||| |||||||||||||||| | ||| |
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| T |
44202 |
attgacgatgttactattccctatgtaaaacattagaagaaaaaatgtcacaaacaaaacttgaatacttgcttaatgttgtaacttggacctaacttct |
44301 |
T |
|
| Q |
201 |
t-----nnnnnnnntaaaattgagttgggtgtgcgagtgtagatgggatcattggcccattattgataggtcattgctctttaggcacccaacaatt |
292 |
Q |
| |
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| ||||||||||||||| || ||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||| ||||||| |
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| T |
44302 |
taaaaataaaaaataaaaattgagttgggtctgttagttcagatgggctcattggcccattattgataagtcattgctttttagacacataacaatt |
44398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 7762 - 7806
Alignment:
| Q |
268 |
attgctctttaggcacccaacaattactcacaagcacctcaaact |
312 |
Q |
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|||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
7762 |
attgctctttagacacctaacaattgttcacaagcacctcaaact |
7806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 56071609 - 56071565
Alignment:
| Q |
268 |
attgctctttaggcacccaacaattactcacaagcacctcaaact |
312 |
Q |
| |
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|||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
56071609 |
attgctctttagacacctaacaattgttcacaagcacctcaaact |
56071565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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