View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_high_4 (Length: 660)
Name: NF11720_high_4
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 606; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 9 - 645
Target Start/End: Complemental strand, 50948358 - 50947721
Alignment:
| Q |
9 |
aatgataagacagtatgaaaaacctgaaaagagcaaagaaatggaacagtctgcaaattacacaaacaatatttaatacagccaactagagatagcatag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50948358 |
aatgataagacagtatgaaaaacctgaaaagagcaaagaaatggaacagtctgcaaattacacaaacaatatttaatacagccaactagagatagcatag |
50948259 |
T |
|
| Q |
109 |
tctctaaaagctggcaaacacactcaaactatatcagataaatttcctaaacacacaaattcacgaaaccaattctccgtcaacctcaaaaaacacttgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50948258 |
tctctaaaagctggcaaacacactcaaactatatcagataaatttcctaaacacacaaattcacgaaaccaattctccgtcaacctcaaaaaacacttgc |
50948159 |
T |
|
| Q |
209 |
tactttgaatttaaccagtcttaattgctgcaagctctagagccacaacagcaccaagctagacacatgtaaaaagctacataactcaacattttcaacc |
308 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50948158 |
tactttgaatgtaaccagtcttaattgctgcaagctctagagccacaacaacaccaagctagacacatgtaaaaagctacataactcaacattttcaacc |
50948059 |
T |
|
| Q |
309 |
tccaatcccatgtagc-aattcatgtactgtttgtgtttgaataagatttctcaacatatgctagtggttggactctactaagtggattttttggatggg |
407 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50948058 |
tccaatcccatgtagcaaattcatgtactgtttgtgtttgaataagatttctcaacatatgctagtggttggactctactaagtggattttttggacggg |
50947959 |
T |
|
| Q |
408 |
aacaagtttactgttatgaatatgatgctagtatttagggtttgaaccctgcaccttctttgcttaaagtttctttatgatcccttggttcaccaatcta |
507 |
Q |
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| T |
50947958 |
aacaagtttactgttatgaatatgatgctagtatttagggtttgaaccctgcacctcctttgcttaaagtttctttatgatcccttggttcaccaatcta |
50947859 |
T |
|
| Q |
508 |
tctacctacttgagacgttcgattatgcaaattatactcggggtatatccaagttaatccggctataacaatatctggttaacttatgtagcttatgacc |
607 |
Q |
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| T |
50947858 |
tctacctacttgagacgttcgattatgcaaattatactcggggtatatccaagttaatccggctataacaatatctggttaacttatttagcttatgacc |
50947759 |
T |
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| Q |
608 |
aaactatgaattttcaatggtcgtttttattagttttt |
645 |
Q |
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| T |
50947758 |
aaactatgaattttcaatggtcatttttattagttttt |
50947721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 444 - 638
Target Start/End: Complemental strand, 15855600 - 15855407
Alignment:
| Q |
444 |
agggtttgaaccctgcaccttctttgcttaaagtttctttatgatcccttggttcaccaatctatctacctacttgagacgttcgattatgcaaattata |
543 |
Q |
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|||||||||||||| |||| ||| |||||||||||||||||| |||| | ||||||||| ||| ||| ||||||| ||||||| ||||||| ||||||| |
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| T |
15855600 |
agggtttgaaccctacaccacctt-gcttaaagtttctttatggtccccttgttcaccaacctagctaactacttgcgacgttcaattatgc-aattata |
15855503 |
T |
|
| Q |
544 |
ctcggggtatatccaag-ttaatcc-ggctataacaatatctggttaa-cttatgtagcttatgaccaaactatgaattttcaatggtcgtttttatt |
638 |
Q |
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||||||| |||||||| || |||| |||||||||||| || ||| |||| ||||||||||||||||||||| |||||||| || |||||||| |
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| T |
15855502 |
ctcgggg--tatccaagtttgatccaaactataacaatatttgactaattttatttagcttatgaccaaactatgatttttcaatattcttttttatt |
15855407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 15855723 - 15855663
Alignment:
| Q |
100 |
atagcatagtctctaaaagctggcaaacacactcaaactatatcagataaatttcctaaac |
160 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
15855723 |
atagcatagtctataaaagctggcaaacacatccaaactatttcagataaatttcctaaac |
15855663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 477 - 545
Target Start/End: Complemental strand, 50957258 - 50957190
Alignment:
| Q |
477 |
tttctttatgatcccttggttcaccaatctatctacctacttgagacgttcgattatgcaaattatact |
545 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
50957258 |
tttctttatagtcccttggttcaccaatctagaaacctacttgagacattcgattatgcaaattatact |
50957190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 50957456 - 50957385
Alignment:
| Q |
251 |
ccacaacagcaccaa-gctagacacatgtaaaaagctacataa--ctcaacattttcaacctccaatcccat |
319 |
Q |
| |
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|||||||| |||||| ||| |||||||||||||||||| |||| ||||||||| |||||||| ||||||| |
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| T |
50957456 |
ccacaacaacaccaacgctggacacatgtaaaaagctatataactctcaacattcccaacctccgatcccat |
50957385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 157 - 639
Target Start/End: Complemental strand, 33631513 - 33631032
Alignment:
| Q |
157 |
aaacacacaaattcacgaaaccaattctccgtcaacctcaaaaaacacttgctactttgaatttaaccagtcttaattgctgcaagctctagagccacaa |
256 |
Q |
| |
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|||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
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| T |
33631513 |
aaactcacgaattcacgaaaccaagtctccgtaaacctcaaaaaacacttgctactttgaatttaaccagtctt----gctgcaagcaccggagccacaa |
33631418 |
T |
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| Q |
257 |
cagcaccaag--------ctagacacatgtaaaaagctacataact--caacattttcaacctccaatcccatgtagcaa-ttcatgtactgtttgtgtt |
345 |
Q |
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|| |||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
33631417 |
caacaccaacactagagtctagacacatttaaaaagctacataactttcaacatttgcaacctccaatcccatgttgcaaattcatgtactgtttgtgtt |
33631318 |
T |
|
| Q |
346 |
t-----gaataagatttctcaacatatgctagtggttggactctactaagtggattttttggatggg--aacaagtttactgttatgaat-atgatgcta |
437 |
Q |
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| T |
33631317 |
tactttgaataaaatttctcaacatatgctagtga------------------aatttttggatgggcaaacaagtttactgttatgaattatgatgcta |
33631236 |
T |
|
| Q |
438 |
gtatttagggtttgaaccctgcaccttctttgcttaaagtttctttatgatcccttggttcaccaatctatctacctacttgagacgttcgattatgcaa |
537 |
Q |
| |
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|| |||||||||||||| || |||| ||||||||||| |||||||||| |||| | ||||||||||||| |||||||||||||| ||||||||||| || |
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| T |
33631235 |
gtttttagggtttgaactttgtacctcctttgcttaaaatttctttatggtcccctagttcaccaatctagctacctacttgagatgttcgattatgaaa |
33631136 |
T |
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| Q |
538 |
attatactcggggtatatccaag-ttaatcc-ggc-tataacaatatctggttaac-ttatgtagcttatgaccaaactatgaattttcaatggtcgttt |
633 |
Q |
| |
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|||| ||||| || |||||||| ||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
33631135 |
attaaactcgtgg--tatccaagtttaatcctggcttataacaatatctggttaactttatttagcttatgaccaaactatgcattttcaatggtctttt |
33631038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 33631638 - 33631514
Alignment:
| Q |
9 |
aatgataagacagtatgaaaaacctgaaaagagcaaagaaatggaacagtctgcaaattacacaaa--caatatttaatacagccaactagagatagcat |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| | |||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
33631638 |
aatgataagacagtatgaaaaaccagaaaagagcaatgaattataacagtatgcaaattacacaaaaacaataattaataaagccaactagagatagcat |
33631539 |
T |
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| Q |
107 |
agtctctaaaagctggcaaacacac |
131 |
Q |
| |
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|||||||||||||| |||||||||| |
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|
| T |
33631538 |
agtctctaaaagctagcaaacacac |
33631514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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