View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_high_8 (Length: 436)
Name: NF11720_high_8
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 37960984 - 37961398
Alignment:
| Q |
10 |
gagagtattcgagagacaaattattgttgttttttgctatggcttttgaaagagaggcccaaaatttcatgaaatggtgaagtgattttccgtctgcagc |
109 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37960984 |
gagagtattcaagagacaaattattgttgttttttgctatggcttttgaaagagaggcccaaaatttcacgaaatggtgaagtgattttccgtctgcagc |
37961083 |
T |
|
| Q |
110 |
aacatggttgtaacttaggcaaatagacaagccggagtttggaagaacggtgacttgaatagccattatagggatgacgcgagtgttgtcttgttcggta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37961084 |
aacatggttgtaacttaggcaaatagacaagccggagtttggaagaacggtgacttgaatagccattatagggatgatgcgagtgttgtcttgttcggta |
37961183 |
T |
|
| Q |
210 |
cgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgctgaggattcagctacggtga |
309 |
Q |
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| T |
37961184 |
cgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgctgaggattcagctacggtga |
37961283 |
T |
|
| Q |
310 |
aggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggag |
409 |
Q |
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| T |
37961284 |
aggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttttgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggag |
37961383 |
T |
|
| Q |
410 |
ggttatggaaagtga |
424 |
Q |
| |
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| T |
37961384 |
ggttatggaaagtga |
37961398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 424
Target Start/End: Complemental strand, 37907073 - 37906670
Alignment:
| Q |
23 |
agacaaattattgttgttttttgctatggcttttgaaagagaggcccaaaatttcatgaaatggtgaagt--gattttccgtctgcagcaacatggttgt |
120 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |
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| T |
37907073 |
agacaaattattgttattttttgctatggcttttgaaagagaagcccaaaatttcatgaaatgatgaagtacgattttccgtatgcagcaacatggttgt |
37906974 |
T |
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| Q |
121 |
aacttaggcaaatagacaagccggagtttggaagaacggtgacttgaatagccattatagggatgacgcgagtgttgtcttgttcggtacgaggtggagg |
220 |
Q |
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|||| ||||||||||| || ||||||||||||||||| |||||| |||||| |||||||||||| || ||| |||||||||||||||||||||||||||| |
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| T |
37906973 |
aactgaggcaaatagagaacccggagtttggaagaacagtgactggaatagacattatagggataacacgaatgttgtcttgttcggtacgaggtggagg |
37906874 |
T |
|
| Q |
221 |
taaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgctgaggattcagctacggtgaaggagatagag |
320 |
Q |
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| T |
37906873 |
taaatttggaacgagatggtgccagttttgagcatcttgtgaatcagatacgaggatgttgaagtctgctgaggattcagctacagtgaaggaaatagag |
37906774 |
T |
|
| Q |
321 |
tcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggagggttatggaaa |
420 |
Q |
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| T |
37906773 |
tcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaa |
37906674 |
T |
|
| Q |
421 |
gtga |
424 |
Q |
| |
|
|||| |
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| T |
37906673 |
gtga |
37906670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 35 - 424
Target Start/End: Complemental strand, 37915222 - 37914833
Alignment:
| Q |
35 |
gttgttttttgctatggcttttgaaagagaggcccaaaatttcatgaaatggtgaagtgattttccgtctgcagcaacatggttgtaacttaggcaaata |
134 |
Q |
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|||||| |||| ||| ||||| |||| | | |||||||||||||||||||| ||||||||||||||||||||| |||| || || | || || ||| |
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| T |
37915222 |
gttgttgtttgttatagctttggaaacaaatgcccaaaatttcatgaaatgatgaagtgattttccgtctgcaacaacgtgtttaaacgcgagacatata |
37915123 |
T |
|
| Q |
135 |
gacaagccggagtttggaagaacggtgacttgaatagccattatagggatgacgcgagtgttgtcttgttcggtacgaggtggaggtaaatttggaacaa |
234 |
Q |
| |
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|| ||||| ||||| || |||| ||||| |||||| ||||| | ||| | | | || | |||||| |||||||||||||||||||||||||||| |
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| T |
37915122 |
gagaagccagagttaggtagaatggtgatttgaatggccatgagaggaacaatacatgtaccattttgttcagtacgaggtggaggtaaatttggaacaa |
37915023 |
T |
|
| Q |
235 |
gatggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggta |
334 |
Q |
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|| ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
37915022 |
gagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttcatcaaggta |
37914923 |
T |
|
| Q |
335 |
acgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggagggttatggaaagtga |
424 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||| ||||||||| |||| || || ||||||||| | ||||||| ||||||||| |
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| T |
37914922 |
acgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtga |
37914833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 346
Target Start/End: Complemental strand, 3783292 - 3783017
Alignment:
| Q |
74 |
tttcatgaaatggtgaagtgattttccgtctgcagcaacatggttgtaacttaggcaaatagacaagccggagtttggaagaacggtgacttgaatagcc |
173 |
Q |
| |
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||||||||| ||||||||||||||||| || | |||| ||||| | | ||||| |||| || || ||||| || |||| |||||||||||| ||| |
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| T |
3783292 |
tttcatgaattggtgaagtgattttccatcacctgcaatgtggttaaacgtgaggcagatagcgaatccagagttaggtagaatggtgacttgaatggcc |
3783193 |
T |
|
| Q |
174 |
attatagggatgacgcgagtgttgtcttgttcggtacgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaa---tcagata |
270 |
Q |
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|||| ||||| |||||| |||| | ||||| ||| |||| | ||| || || |||| || | ||||| | |||| | ||||||||||| || || | |
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| T |
3783192 |
attagagggacgacgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaaaaaagggtgcaaatttttaacatcttgtgaagaatctgaaa |
3783093 |
T |
|
| Q |
271 |
cgaggatattgaagtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaagg |
346 |
Q |
| |
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|||| ||||||| |||| |||||||||| | ||||||||||| ||||||| ||| |||||| ||||| ||||| |
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| T |
3783092 |
taaggaggttgaagtttgctaaggattcagcaatggtgaaggagagagagtctccattgaggtagcgtatataagg |
3783017 |
T |
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