View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_high_9 (Length: 427)
Name: NF11720_high_9
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 1217100 - 1216703
Alignment:
| Q |
20 |
atacacataagcagaaaataagataaatggaaaatttgaagttcaaatcttgcatgacttgagatcacatggaattccttttaattataatgcagactgc |
119 |
Q |
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| T |
1217100 |
atacacataagcagaaaataagataaatggaaaatttgaagttcaaatcttgcacgacttgagatcacatggaattccttttaattataatgcagactgc |
1217001 |
T |
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| Q |
120 |
attttcacataccttgcaaaacttcagatcgcaaggattttgttttaattatattcgtcatcatagataacatgttgcagccagttggagggtccaggcc |
219 |
Q |
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| T |
1217000 |
attttcacataccttgcaaaacttcagattgcaaggattttgttttaattatattcgtcatcatagataacatgctgcagccagttggagcgtccaggcc |
1216901 |
T |
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| Q |
220 |
cactttgacttcaagtactgcaaactgaagaacgtctcaaaagattcaggaaaacttatatacgaagttgggtaacctaatcttacagtggcgtggcgta |
319 |
Q |
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| T |
1216900 |
cactttgacttcaagtactgcaaagtgaagaacgtctcaaaagattcaggaaaacttatatacgaagttgggtaacctaatcttacagtggcgtggcgta |
1216801 |
T |
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| Q |
320 |
aacaaacataatagataacaattctaatgtaccttgcactttaatggtgtcaataaattttttgggtttaggaacaacacccccactttgaatctctg |
417 |
Q |
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| T |
1216800 |
aacaaacataatagataacaattctaatgtaccttgcactttaatggtgtcaataaattttttgggtttaggaacaacacccccactttgaatctctg |
1216703 |
T |
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