View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_low_1 (Length: 875)
Name: NF11720_low_1
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 820; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 19 - 866
Target Start/End: Complemental strand, 42349667 - 42348820
Alignment:
| Q |
19 |
ctaaacagcaacaaaatcaaagacttttgttaattacacatttataagaagcacaacattgtgcatcaaaatagtttggttaagctcggaaagcatatca |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42349667 |
ctaaacagcaacaaaatcaaagacttttgttaattacacatttataagaagcacaacattgtgcatcaaaatagtttggttaagctcagaaagcatatca |
42349568 |
T |
|
| Q |
119 |
ctgcaaattaggacttggcctattaagttctgagttagtttagtcctaataactgtactaatggaacatgttttaatttagattacttcaaaaggttcaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42349567 |
ctgcaaattaggacttggcctattaagttctgagttagtttagtcctaataactgtattaatggaacatgttttaatttagattacttcaaaaggttcaa |
42349468 |
T |
|
| Q |
219 |
acatgaaacctgatcctagtaattgaaaaagttcaacagccaattttttattaactacatagtaaagtgaataaattcccatctgtgatgtaaattgtaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42349467 |
acatgaaacctgatcctagtaattgaaaaagttcaacagccaattttttattaactacatagtaaagttaataaattcccatctgtgatgtaaattgtaa |
42349368 |
T |
|
| Q |
319 |
actgtaaatttggcatatcattgaaacaagaacaaaataagaattgaaaaggtaaaacaagtaatgtgaaactcacttgacagcatttgttatgacctca |
418 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42349367 |
actgtaaatttggcatatgattgaaacaagaacaaaataagaattgaaaaggtaaaacaagtaatgtgaaactcacttgacagcatttgttatgacctta |
42349268 |
T |
|
| Q |
419 |
taaggatctgatccagccccaataaacaccaaatgagtcccatcaaattcctccacatcaggacatcctacaatcatgcacatggcaaaaaatcacaatg |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42349267 |
taaggatctgatccagccccaataaacaccaaatgagtcccatcaaattcctccacatcaggacatcctacaatcatgcacatagcaaaaaatcacaatg |
42349168 |
T |
|
| Q |
519 |
catacctaacatacactactctgcgcactgtgatcctacgcaactcgacggtttagtttctacatttatgtgtggaggatacatggtttacacacacaaa |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42349167 |
catacctaacatacactactctgcgcactgtgatcctacgcaactcgacggtttagtttctacatttatgtgtggaggatacatggtttacacacacaaa |
42349068 |
T |
|
| Q |
619 |
aaacattaacaaatttatgaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttcca |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42349067 |
aaacattaacaaatttatgaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttcca |
42348968 |
T |
|
| Q |
719 |
aaagaggtaacaaaaccgcgtaggtagaaccgtcttggtcttgttctccattgtcgatccctccctcaatatcacaacccttatgtgcttcaataagcaa |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42348967 |
aaagaggtaacaaaaccgcgtaggtagaaccatcttggtcttgttctccattgtcgatccctccctcaatatcacaacccttatgtgcttcaataagcaa |
42348868 |
T |
|
| Q |
819 |
gaactgtgtctcaaaggggatttcttgtccacaattccccattctctg |
866 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42348867 |
gaactgtgtctcaaaggggatttcttgtccacaattccccattctctg |
42348820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 361 - 494
Target Start/End: Complemental strand, 19057580 - 19057447
Alignment:
| Q |
361 |
attgaaaaggtaaaacaagtaatgtgaaactcacttgacagcatttgttatgacctcataaggatctgatccagccccaataaacaccaaatgagtccca |
460 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057580 |
attgaaaaggtaaagcatgtattgtgaaactcacttgacagcatttgttataacttcataaggatctgatccagccccaataaacaccaaatgagtccca |
19057481 |
T |
|
| Q |
461 |
tcaaattcctccacatcaggacatcctacaatca |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
19057480 |
tcaaattcctccacatcaggacatcctacaatca |
19057447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 637 - 755
Target Start/End: Complemental strand, 19057310 - 19057201
Alignment:
| Q |
637 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
736 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
19057310 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
19057220 |
T |
|
| Q |
737 |
cgtaggtagaaccgtcttg |
755 |
Q |
| |
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||||||||||||| ||||| |
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| T |
19057219 |
cgtaggtagaaccatcttg |
19057201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 8e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 361 - 495
Target Start/End: Original strand, 50804605 - 50804742
Alignment:
| Q |
361 |
attgaaaaggtaaaacaagtaatgtgaaactcacttgacagcatttgttatgacctcataaggatctgatccagccccaataaacaccaaatgagtccca |
460 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||| || | |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804605 |
attgaaaaggtaaagcatgtattgtgaaactcactagaaaacatttgttataacttcataaggatctgatccagccccaataaacaccaaatgagtccca |
50804704 |
T |
|
| Q |
461 |
tcaaattcctcca---catcaggacatcctacaatcat |
495 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||| |
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| T |
50804705 |
tcaaattgctccacatcatcaggacatcctacaatcat |
50804742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 361 - 495
Target Start/End: Complemental strand, 50871272 - 50871135
Alignment:
| Q |
361 |
attgaaaaggtaaaacaagtaatgtgaaactcacttgacagcatttgttatgacctcataaggatctgatccagccccaataaacaccaaatgagtccca |
460 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||| || | |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871272 |
attgaaaaggtaaagcatgtattgtgaaactcactagaaaacatttgttataacttcataaggatctgatccagccccaataaacaccaaatgagtccca |
50871173 |
T |
|
| Q |
461 |
tcaaattcctcca---catcaggacatcctacaatcat |
495 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |
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|
| T |
50871172 |
tcaaattgctccacatcatcaggacatcctacaatcat |
50871135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 637 - 755
Target Start/End: Original strand, 50804878 - 50804987
Alignment:
| Q |
637 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
736 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
50804878 |
gaagagtacataccactttcaacacaaatctcaatttcat---------tcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
50804968 |
T |
|
| Q |
737 |
cgtaggtagaaccgtcttg |
755 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
50804969 |
cgtaggtagaaccatcttg |
50804987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 637 - 755
Target Start/End: Complemental strand, 50870999 - 50870890
Alignment:
| Q |
637 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
736 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
50870999 |
gaagagtacataccactttcaacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
50870909 |
T |
|
| Q |
737 |
cgtaggtagaaccgtcttg |
755 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
50870908 |
cgtaggtagaaccatcttg |
50870890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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