View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_low_18 (Length: 312)
Name: NF11720_low_18
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 53431079 - 53430788
Alignment:
| Q |
9 |
aatgtatgtatgtaaatgtaatcctatctatcaactcataaattcctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaa |
108 |
Q |
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| T |
53431079 |
aatgtatgtatgtaaatgtaatcctatctatcaactcataaattcctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaa |
53430980 |
T |
|
| Q |
109 |
cagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53430979 |
cagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccat |
53430880 |
T |
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| Q |
209 |
tgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttcaattgcccta |
300 |
Q |
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| T |
53430879 |
tgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttcaactgcccta |
53430788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 60 - 300
Target Start/End: Complemental strand, 26095415 - 26095175
Alignment:
| Q |
60 |
tttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataa |
159 |
Q |
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||||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| || | |||| |
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| T |
26095415 |
tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataa |
26095316 |
T |
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| Q |
160 |
caccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaa |
259 |
Q |
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| T |
26095315 |
caacaactgaaccactccaaccagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaa |
26095216 |
T |
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| Q |
260 |
ggttatttcaaaaactgtccctgataatttcaattgcccta |
300 |
Q |
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| T |
26095215 |
ggttatttcaaaaactgtccctgatagtttcaactgcccta |
26095175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 57 - 298
Target Start/End: Original strand, 48374785 - 48375026
Alignment:
| Q |
57 |
ttttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaa |
156 |
Q |
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||||||| | || ||||||| ||| |||| || |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| || | |
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| T |
48374785 |
ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggaca |
48374884 |
T |
|
| Q |
157 |
taacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactat |
256 |
Q |
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||||| ||| |||||||| || ||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||||| ||||| |
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| T |
48374885 |
taacaacaattgaatcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactat |
48374984 |
T |
|
| Q |
257 |
taaggttatttcaaaaactgtccctgataatttcaattgccc |
298 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
48374985 |
taaggttatttcaaaaactgtccctgatactttcaactgccc |
48375026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 58 - 300
Target Start/End: Complemental strand, 53423068 - 53422825
Alignment:
| Q |
58 |
tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaat |
157 |
Q |
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|||||| |||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
53423068 |
tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaat |
53422969 |
T |
|
| Q |
158 |
aacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaa-caactat |
256 |
Q |
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||| | ||||||||| || |||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||| | || || |
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| T |
53422968 |
tacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaat |
53422869 |
T |
|
| Q |
257 |
taaggttatttcaaaaactgtccctgataatttcaattgcccta |
300 |
Q |
| |
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||||| ||| |||||||| ||||||| || ||||| |||||||| |
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| T |
53422868 |
taaggctatctcaaaaaccgtccctggtagtttcagttgcccta |
53422825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 58 - 298
Target Start/End: Complemental strand, 53307870 - 53307630
Alignment:
| Q |
58 |
tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaat |
157 |
Q |
| |
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||||| ||||| ||||| ||||| ||||||| |||||| ||||||||| || |||| ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
53307870 |
tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaat |
53307771 |
T |
|
| Q |
158 |
aacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactatt |
257 |
Q |
| |
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|||| |||||||| ||| || ||| || || ||||||||||| ||||||||||||||| | |||| ||||||||||||||||| || ||||| || | |
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| T |
53307770 |
aacaacaactgaaccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtg |
53307671 |
T |
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| Q |
258 |
aaggttatttcaaaaactgtccctgataatttcaattgccc |
298 |
Q |
| |
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||| |||| || ||||| | |||||||| |||||| ||||| |
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| T |
53307670 |
aagattatctctaaaaccgcccctgatagtttcaactgccc |
53307630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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