View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11720_low_19 (Length: 301)
Name: NF11720_low_19
Description: NF11720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11720_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 625987 - 625695
Alignment:
| Q |
9 |
agcagagagttcacctgatgatgtgacaaatgaggggagtacaacatcaacaccagttagagatgatagaaatcatgccattgcagttgcagaagccact |
108 |
Q |
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| T |
625987 |
agcagagagttcacctgatgatgtgacaaatgaggggagtacaacatcaacaccagttagagatgatagaaatcatgccattgcagttgcagaagccact |
625888 |
T |
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| Q |
109 |
gcagccgcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggttatggacgccataacaaggaagaaagagcagcaa |
208 |
Q |
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| T |
625887 |
gcagcagcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggttatggacgccataacaaggaagaaagagcagcaa |
625788 |
T |
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| Q |
209 |
cattcattcaatcacactatagaggatacctagtaagatctcatctatcttctatttagggtccgattagattcacttatttgagtttatcta |
301 |
Q |
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| T |
625787 |
cattcattcaatcacactatagaggatacctagtaagatctcatctatcttctatttagggtccgattagattcacttatttgagtttatcta |
625695 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 41671759 - 41671928
Alignment:
| Q |
76 |
agaaatcatgccattgcagttgcagaagccactgcagccgcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggtt |
175 |
Q |
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| T |
41671759 |
agaaatcatgcaattgcctatgctgcagcaacagcagcagcagctgaagctgcagtggctgcggctcaagcagctgctagagttgtgagattggcaggtc |
41671858 |
T |
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| Q |
176 |
atggacgccataacaaggaagaaagagcagcaacattcattcaatcacactatagaggatacctagtaag |
245 |
Q |
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| T |
41671859 |
atggacgtaactctaaggtcgaaaaagcagcaatactaattcaatcctactatagaggatacctagtaag |
41671928 |
T |
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